gnu: r-rsamtools: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here... * gnu/packages/bioconductor.scm (r-rsamtools): ...to here.
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					 2 changed files with 43 additions and 43 deletions
				
			
		|  | @ -2147,6 +2147,49 @@ reports together for a particular project that can be viewed in a web | |||
| browser.") | ||||
|     (license license:artistic2.0))) | ||||
| 
 | ||||
| (define-public r-rsamtools | ||||
|   (package | ||||
|     (name "r-rsamtools") | ||||
|     (version "2.6.0") | ||||
|     (source (origin | ||||
|               (method url-fetch) | ||||
|               (uri (bioconductor-uri "Rsamtools" version)) | ||||
|               (sha256 | ||||
|                (base32 | ||||
|                 "040pggkwglc6wy90qnc7xcdnaj0v3iqlykvvsl74241409qly554")))) | ||||
|     (properties | ||||
|      `((upstream-name . "Rsamtools"))) | ||||
|     (build-system r-build-system) | ||||
|     (arguments | ||||
|      `(#:phases | ||||
|        (modify-phases %standard-phases | ||||
|          (add-after 'unpack 'use-system-zlib | ||||
|            (lambda _ | ||||
|              (substitute* "DESCRIPTION" | ||||
|                (("zlibbioc, ") "")) | ||||
|              (substitute* "NAMESPACE" | ||||
|                (("import\\(zlibbioc\\)") "")) | ||||
|              #t))))) | ||||
|     (propagated-inputs | ||||
|      `(("r-biocgenerics" ,r-biocgenerics) | ||||
|        ("r-biocparallel" ,r-biocparallel) | ||||
|        ("r-biostrings" ,r-biostrings) | ||||
|        ("r-bitops" ,r-bitops) | ||||
|        ("r-genomeinfodb" ,r-genomeinfodb) | ||||
|        ("r-genomicranges" ,r-genomicranges) | ||||
|        ("r-iranges" ,r-iranges) | ||||
|        ("r-rhtslib" ,r-rhtslib) | ||||
|        ("r-s4vectors" ,r-s4vectors) | ||||
|        ("r-xvector" ,r-xvector))) | ||||
|     (home-page "https://bioconductor.org/packages/release/bioc/html/Rsamtools.html") | ||||
|     (synopsis "Interface to samtools, bcftools, and tabix") | ||||
|     (description | ||||
|      "This package provides an interface to the @code{samtools}, | ||||
| @code{bcftools}, and @code{tabix} utilities for manipulating SAM (Sequence | ||||
| Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed | ||||
| tab-delimited (tabix) files.") | ||||
|     (license license:expat))) | ||||
| 
 | ||||
| (define-public r-shortread | ||||
|   (package | ||||
|     (name "r-shortread") | ||||
|  |  | |||
|  | @ -7691,49 +7691,6 @@ including VCF header and contents in RDF and JSON.") | |||
|     (home-page "https://github.com/vcflib/bio-vcf") | ||||
|     (license license:expat))) | ||||
| 
 | ||||
| (define-public r-rsamtools | ||||
|   (package | ||||
|     (name "r-rsamtools") | ||||
|     (version "2.6.0") | ||||
|     (source (origin | ||||
|               (method url-fetch) | ||||
|               (uri (bioconductor-uri "Rsamtools" version)) | ||||
|               (sha256 | ||||
|                (base32 | ||||
|                 "040pggkwglc6wy90qnc7xcdnaj0v3iqlykvvsl74241409qly554")))) | ||||
|     (properties | ||||
|      `((upstream-name . "Rsamtools"))) | ||||
|     (build-system r-build-system) | ||||
|     (arguments | ||||
|      `(#:phases | ||||
|        (modify-phases %standard-phases | ||||
|          (add-after 'unpack 'use-system-zlib | ||||
|            (lambda _ | ||||
|              (substitute* "DESCRIPTION" | ||||
|                (("zlibbioc, ") "")) | ||||
|              (substitute* "NAMESPACE" | ||||
|                (("import\\(zlibbioc\\)") "")) | ||||
|              #t))))) | ||||
|     (propagated-inputs | ||||
|      `(("r-biocgenerics" ,r-biocgenerics) | ||||
|        ("r-biocparallel" ,r-biocparallel) | ||||
|        ("r-biostrings" ,r-biostrings) | ||||
|        ("r-bitops" ,r-bitops) | ||||
|        ("r-genomeinfodb" ,r-genomeinfodb) | ||||
|        ("r-genomicranges" ,r-genomicranges) | ||||
|        ("r-iranges" ,r-iranges) | ||||
|        ("r-rhtslib" ,r-rhtslib) | ||||
|        ("r-s4vectors" ,r-s4vectors) | ||||
|        ("r-xvector" ,r-xvector))) | ||||
|     (home-page "https://bioconductor.org/packages/release/bioc/html/Rsamtools.html") | ||||
|     (synopsis "Interface to samtools, bcftools, and tabix") | ||||
|     (description | ||||
|      "This package provides an interface to the @code{samtools}, | ||||
| @code{bcftools}, and @code{tabix} utilities for manipulating SAM (Sequence | ||||
| Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed | ||||
| tab-delimited (tabix) files.") | ||||
|     (license license:expat))) | ||||
| 
 | ||||
| (define-public r-delayedarray | ||||
|   (package | ||||
|     (name "r-delayedarray") | ||||
|  |  | |||
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