gnu: Add r-screpertoire.
* gnu/packages/bioconductor.scm (r-screpertoire): New variable. Change-Id: Iaa876f787d5e39ca2888bf2082da3d7839224e15
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@ -10291,6 +10291,49 @@ a scRNA-seq experiment onto the cell-types or individual cells identified in a
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different experiment.")
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(license license:gpl3)))
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(define-public r-screpertoire
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(package
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(name "r-screpertoire")
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(version "1.12.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "scRepertoire" version))
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(sha256
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(base32 "1wgs8dv5zl82iciy86w5ws1gq8v2piklcifbw7gmbw60kijyr2l1"))))
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(properties `((upstream-name . "scRepertoire")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-doparallel
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r-dplyr
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r-ggalluvial
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r-ggplot2
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r-ggraph
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r-igraph
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r-plyr
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r-powertcr
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r-reshape2
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r-rlang
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r-seuratobject
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r-singlecellexperiment
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r-stringdist
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r-stringr
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r-summarizedexperiment
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r-tidygraph
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r-vegan))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/scRepertoire")
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(synopsis "Toolkit for single-cell immune receptor profiling")
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(description
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"The scRepertoire package was built to process data derived from the 10x
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Genomics Chromium Immune Profiling for both @acronym{TCR, T-cell receptor} and
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@acronym{Ig, immunoglobulin} enrichment workflows and subsequently interacts with
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the popular Seurat and SingleCellExperiment R packages. It also allows for
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general analysis of single-cell clonotype information without the use of
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expression information. The package functions as a wrapper for Startrac and
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powerTCR R packages.")
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(license license:gpl2)))
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(define-public r-scry
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(package
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(name "r-scry")
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