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gnu: r-harmony: Update to 0.1.

* gnu/packages/cran.scm (r-harmony): Update to 0.1.
[native-inputs]: Add autoconf.
master
Ricardo Wurmus 2020-03-24 11:05:01 +01:00
parent 8ff6386491
commit b0d1da986b
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GPG Key ID: 197A5888235FACAC
1 changed files with 39 additions and 34 deletions

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@ -42,6 +42,7 @@
#:use-module (guix utils)
#:use-module (guix build-system r)
#:use-module (gnu packages algebra)
#:use-module (gnu packages autotools)
#:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages c)
@ -15690,43 +15691,47 @@ dataset-specific factors.")
(license license:gpl3)))
(define-public r-harmony
;; There are no tagged commits
(let ((commit "4d1653870d4dd70fff1807c182882db1fbf9af5a")
(revision "1"))
(package
(name "r-harmony")
(version (git-version "1.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/immunogenomics/harmony")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1gasdldr4aalr9h2q9kmm3y4i7azkgnhdn4bmvsszs7lg9xacw85"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cowplot" ,r-cowplot)
("r-dplyr" ,r-dplyr)
("r-ggplot2" ,r-ggplot2)
("r-irlba" ,r-irlba)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-rcppprogress" ,r-rcppprogress)
("r-rlang" ,r-rlang)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)))
(home-page "https://github.com/immunogenomics/harmony")
(synopsis "Integration of single cell sequencing data")
(description
"This package provides an implementation of the Harmony algorithm for
(package
(name "r-harmony")
(version "0.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/immunogenomics/harmony")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"05r401q09rbr6fqhb9mbd95082cjdi3nag1cv6zn96xkr0f6imq9"))
(modules '((guix build utils)))
(snippet
'(begin
(for-each delete-file '("config.status" "configure"))
#t))))
(build-system r-build-system)
(propagated-inputs
`(("r-cowplot" ,r-cowplot)
("r-dplyr" ,r-dplyr)
("r-ggplot2" ,r-ggplot2)
("r-irlba" ,r-irlba)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-rcppprogress" ,r-rcppprogress)
("r-rlang" ,r-rlang)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)))
(native-inputs
`(("autoconf" ,autoconf)))
(home-page "https://github.com/immunogenomics/harmony")
(synopsis "Integration of single cell sequencing data")
(description
"This package provides an implementation of the Harmony algorithm for
single cell integration, described in Korsunsky et al
@url{doi.org/10.1101/461954}. The package includes a standalone Harmony
function and interfaces to external frameworks.")
(license license:gpl3))))
(license license:gpl3)))
(define-public r-covr
(package