gnu: r-harmony: Update to 0.1.
* gnu/packages/cran.scm (r-harmony): Update to 0.1. [native-inputs]: Add autoconf.master
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@ -42,6 +42,7 @@
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#:use-module (guix utils)
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#:use-module (guix build-system r)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages base)
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#:use-module (gnu packages bioinformatics)
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#:use-module (gnu packages c)
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@ -15690,43 +15691,47 @@ dataset-specific factors.")
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(license license:gpl3)))
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(define-public r-harmony
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;; There are no tagged commits
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(let ((commit "4d1653870d4dd70fff1807c182882db1fbf9af5a")
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(revision "1"))
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(package
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(name "r-harmony")
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(version (git-version "1.0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/immunogenomics/harmony")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1gasdldr4aalr9h2q9kmm3y4i7azkgnhdn4bmvsszs7lg9xacw85"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-cowplot" ,r-cowplot)
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("r-dplyr" ,r-dplyr)
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("r-ggplot2" ,r-ggplot2)
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("r-irlba" ,r-irlba)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-rcpparmadillo" ,r-rcpparmadillo)
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("r-rcppprogress" ,r-rcppprogress)
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("r-rlang" ,r-rlang)
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("r-tibble" ,r-tibble)
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("r-tidyr" ,r-tidyr)))
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(home-page "https://github.com/immunogenomics/harmony")
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(synopsis "Integration of single cell sequencing data")
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(description
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"This package provides an implementation of the Harmony algorithm for
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(package
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(name "r-harmony")
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(version "0.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/immunogenomics/harmony")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"05r401q09rbr6fqhb9mbd95082cjdi3nag1cv6zn96xkr0f6imq9"))
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(modules '((guix build utils)))
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(snippet
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'(begin
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(for-each delete-file '("config.status" "configure"))
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#t))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-cowplot" ,r-cowplot)
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("r-dplyr" ,r-dplyr)
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("r-ggplot2" ,r-ggplot2)
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("r-irlba" ,r-irlba)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-rcpparmadillo" ,r-rcpparmadillo)
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("r-rcppprogress" ,r-rcppprogress)
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("r-rlang" ,r-rlang)
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("r-tibble" ,r-tibble)
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("r-tidyr" ,r-tidyr)))
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(native-inputs
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`(("autoconf" ,autoconf)))
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(home-page "https://github.com/immunogenomics/harmony")
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(synopsis "Integration of single cell sequencing data")
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(description
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"This package provides an implementation of the Harmony algorithm for
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single cell integration, described in Korsunsky et al
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@url{doi.org/10.1101/461954}. The package includes a standalone Harmony
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function and interfaces to external frameworks.")
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(license license:gpl3))))
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(license license:gpl3)))
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(define-public r-covr
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(package
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