gnu: Add bio-blastxmlparser.
* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.master
parent
0e4e03f884
commit
b2bddb07ef
|
@ -2733,6 +2733,30 @@ chr+pos+alt information in a database.")
|
|||
(home-page "https://github.com/pjotrp/bio-locus")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public bio-blastxmlparser
|
||||
(package
|
||||
(name "bio-blastxmlparser")
|
||||
(version "2.0.4")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (rubygems-uri "bio-blastxmlparser" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692"))))
|
||||
(build-system ruby-build-system)
|
||||
(propagated-inputs
|
||||
`(("ruby-bio-logger" ,ruby-bio-logger)
|
||||
("ruby-nokogiri" ,ruby-nokogiri)))
|
||||
(inputs
|
||||
`(("ruby-rspec" ,ruby-rspec)))
|
||||
(synopsis "Fast big data BLAST XML parser and library")
|
||||
(description
|
||||
"Very fast parallel big-data BLAST XML file parser which can be used as
|
||||
command line utility. Use blastxmlparser to: Parse BLAST XML; filter output;
|
||||
generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.")
|
||||
(home-page "http://github.com/pjotrp/blastxmlparser")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public bioruby
|
||||
(package
|
||||
(name "bioruby")
|
||||
|
|
Reference in New Issue