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gnu: Add r-saturn.

* gnu/packages/bioconductor.scm (r-saturn): New variable.
master
Ricardo Wurmus 2023-07-11 16:36:55 +02:00
parent 990bac0ea5
commit b4cafa71ae
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@ -8803,6 +8803,40 @@ differential expression analysis, RNAseq data and related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-saturn
(package
(name "r-saturn")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "satuRn" version))
(sha256
(base32
"0frm7iblxkc8ajcdqrfgsvf4krn6x8cr3mx7fnzq06xij0mqm3sj"))))
(properties `((upstream-name . "satuRn")))
(build-system r-build-system)
(propagated-inputs (list r-biocparallel
r-boot
r-ggplot2
r-limma
r-locfdr
r-matrix
r-pbapply
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/statOmics/satuRn")
(synopsis
"Analysis of differential transcript usage for scRNA-seq applications")
(description
"satuRn provides a framework for performing differential transcript usage
analyses. The package consists of three main functions. The first function,
@code{fitDTU}, fits quasi-binomial generalized linear models that model
transcript usage in different groups of interest. The second function,
@code{testDTU}, tests for differential usage of transcripts between groups of
interest. Finally, @code{plotDTU} visualizes the usage profiles of
transcripts in groups of interest.")
(license license:artistic2.0)))
(define-public r-scannotatr
(package
(name "r-scannotatr")