gnu: mumps: Update to 5.5.1
* gnu/packages/maths.scm (mumps): Update to 5.5.1. Stop applying patches as the build configuration has been updated upstream. Allow for further optimized BLR compression by specifying the -DBLR_MT build option. * gnu/packages/patches/mumps-build-parallelism.patch: File removed. * gnu/packages/patches/mumps-shared-libseq.patch: File removed. * gnu/packages/patches/mumps-shared-mumps.patch: File removed. * gnu/packages/patches/mumps-shared-pord.patch: File removed. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
FELŠÖCI Marek
Ludovic Courtès
parent
81faecf77c
commit
b70d6ce627
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@ -1525,10 +1525,6 @@ dist_patch_DATA = \
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%D%/packages/patches/mosaicatcher-unbundle-htslib.patch \
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%D%/packages/patches/mrrescue-support-love-11.patch \
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%D%/packages/patches/mtools-mformat-uninitialized.patch \
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%D%/packages/patches/mumps-build-parallelism.patch \
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%D%/packages/patches/mumps-shared-libseq.patch \
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%D%/packages/patches/mumps-shared-mumps.patch \
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%D%/packages/patches/mumps-shared-pord.patch \
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%D%/packages/patches/mupen64plus-ui-console-notice.patch \
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%D%/packages/patches/mupen64plus-video-z64-glew-correct-path.patch \
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%D%/packages/patches/musl-cross-locale.patch \
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@ -53,6 +53,7 @@
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;;; Copyright © 2022 Zhu Zihao <all_but_last@163.com>
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;;; Copyright © 2022 Sharlatan Hellseher <sharlatanus@gmail.com>
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;;; Copyright © 2022 Philip McGrath <philip@philipmcgrath.com>
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;;; Copyright © 2022 Marek Felšöci <marek@felsoci.sk>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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@ -3735,7 +3736,7 @@ language understood by many solvers.")
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(define-public mumps
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(package
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(name "mumps")
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(version "5.2.1")
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(version "5.5.1")
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(source
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(origin
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(method url-fetch)
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@ -3743,11 +3744,7 @@ language understood by many solvers.")
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version ".tar.gz"))
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(sha256
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(base32
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"0jklh54x4y3ik1zkw6db7766kakjm5910diyaghfxxf8vwsgr26r"))
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(patches (search-patches "mumps-build-parallelism.patch"
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"mumps-shared-libseq.patch"
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"mumps-shared-mumps.patch"
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"mumps-shared-pord.patch"))))
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"05gs2i8b76m9flm1826fxpyfnwibjjawbmfza3ylrvj7zaag5gqs"))))
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(build-system gnu-build-system)
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(inputs
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(list gfortran
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@ -3764,38 +3761,50 @@ language understood by many solvers.")
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#:phases
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(modify-phases %standard-phases
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(replace 'configure
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(lambda* (#:key inputs #:allow-other-keys)
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(call-with-output-file "Makefile.inc"
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(lambda (port)
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(format port "
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PLAT =
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LIBEXT = .a
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LIBEXT_SHARED = .so
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OUTC = -o
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OUTF = -o
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BLASDIR = ~a
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LIBBLAS = -Wl,-rpath=$(BLASDIR)/lib -Wl,-rpath='$$ORIGIN'
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LIBBLAS += -L$(BLASDIR)/lib
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LIBBLAS += -lopenblas~@[
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SCALAPDIR = ~a
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SCALAP = -Wl,-rpath=$(SCALAPDIR)/lib -Wl,-rpath='$$ORIGIN'
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SCALAP += -L$(SCALAPDIR)/lib -lscalapack~]
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RM = rm -f~:[
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CC = gcc
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FC = gfortran
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FL = gfortran
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INCSEQ = -I$(topdir)/libseq
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LIBSEQ = $(topdir)/libseq/libmpiseq.a
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LIBSEQNEEDED = libseqneeded~;
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LIBSEQ = $(LAPACK) -L$(topdir)/libseq -lmpiseq
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LIBSEQNEEDED = libseqneeded
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INCS = $(INCSEQ)
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LIBS = $(LIBSEQ)~;
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CC = mpicc
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FC = mpifort
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FL = mpifort~]
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FL = mpifort
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INCPAR =
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LIBPAR = $(SCALAP) $(LAPACK)
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LIBSEQNEEDED =
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INCS = $(INCPAR)
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LIBS = $(LIBPAR)~]
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AR = ar vr # rules require trailing space, ugh...
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RANLIB = ranlib
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BLASDIR = ~a
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LIBBLAS = -Wl,-rpath=$(BLASDIR) -Wl,-rpath='$$ORIGIN' -L$(BLASDIR) -lopenblas~@[
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SCALAPDIR = ~a
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SCALAP = -Wl,-rpath=$(SCALAPDIR) -Wl,-rpath='$$ORIGIN' -L$(SCALAPDIR) -lscalapack~]
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LIBOTHERS = -pthread
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CDEFS = -DAdd_
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PIC = -fPIC
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OPTF = -O2 -DALLOW_NON_INIT -fallow-argument-mismatch $(PIC)
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OPTL = -O2 $(PIC)
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OPTC = -O2 $(PIC)
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INCS = $(INCSEQ)
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LIBS = $(SCALAP) $(LIBSEQ)
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FPIC_OPT = $(PIC)
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RPATH_OPT = -Wl,-rpath,~a/lib
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OPTF = -O2 -fopenmp -DALLOW_NON_INIT -DBLR_MT
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OPTF += -fallow-argument-mismatch $(PIC)
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OPTL = -O2 -fopenmp $(PIC)
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OPTC = -O2 -fopenmp $(PIC)
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LPORDDIR = $(topdir)/PORD/lib
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IPORD = -I$(topdir)/PORD/include
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LPORD = $(LPORDDIR)/libpord.a
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@ -3806,16 +3815,17 @@ LMETIS = -Wl,-rpath $(METISDIR)/lib -L$(METISDIR)/lib -lmetis
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ORDERINGSF += -Dmetis~]~@[~:{
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SCOTCHDIR = ~a
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ISCOTCH = -I$(SCOTCHDIR)/include
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LSCOTCH = -Wl,-rpath $(SCOTCHDIR)/lib -L$(SCOTCHDIR)/lib ~a-lesmumps -lscotch -lscotcherr
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LSCOTCH = -Wl,-rpath $(SCOTCHDIR)/lib -L$(SCOTCHDIR)/lib ~a -lesmumps
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LSCOTCH += -lscotch -lscotcherr
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ORDERINGSF += ~a~}~]
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ORDERINGSC = $(ORDERINGSF)
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LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH) $(LIBSEQ)
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LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH)
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IORDERINGSF = $(ISCOTCH)
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IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)"
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(->bool (which "mpicc")) ;MPI support enabled?
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(dirname
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(dirname (search-input-file inputs "/include/cblas.h")))
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(assoc-ref inputs "openblas")
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(assoc-ref inputs "scalapack")
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(->bool (which "mpicc")) ;; MPI support enabled?
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(assoc-ref outputs "out")
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(assoc-ref inputs "metis")
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(match (list (assoc-ref inputs "pt-scotch")
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(assoc-ref inputs "scotch"))
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@ -3830,8 +3840,11 @@ IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)"
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(replace 'build
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;; By default only the d-precision library is built. Make with "all"
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;; target so that all precision libraries and examples are built.
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;; Then, "make allshared" builts equivalent shared libraries as well.
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(lambda _
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(invoke "make" "all"
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(format #f "-j~a" (parallel-job-count)))
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(invoke "make" "allshared"
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(format #f "-j~a" (parallel-job-count)))))
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(replace 'check
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;; Run the simple test drivers, which read test input from stdin:
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@ -1,13 +0,0 @@
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Building sublibraries in parallel can lead to race conditions on the libseq
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and lipord targets.
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--- MUMPS_5.0.0/Makefile.orig 2015-06-15 10:08:54.523146562 -0500
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+++ MUMPS_5.0.0/Makefile 2015-06-15 10:19:44.074367512 -0500
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@@ -11,6 +11,7 @@
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sexamples dexamples cexamples zexamples \
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mumps_lib requiredobj libseqneeded clean
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+.NOTPARALLEL:
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alllib: c z s d
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all: cexamples zexamples sexamples dexamples
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@ -1,42 +0,0 @@
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Create a shared version of the sequential library, MUST BE LAST IN SERIES
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Index: mumps/libseq/Makefile
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===================================================================
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--- mumps.orig/libseq/Makefile
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+++ mumps/libseq/Makefile
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@@ -8,15 +8,17 @@ all: libmpiseq
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include ../Makefile.inc
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-libmpiseq: libmpiseq$(PLAT)$(LIBEXT)
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+libmpiseq: libmpiseq$(PLAT).a libmpiseq$(PLAT).so
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-libmpiseq$(PLAT)$(LIBEXT): mpi.o mpic.o elapse.o
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- $(AR)$@ mpi.o mpic.o elapse.o
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+libmpiseq$(PLAT).a: mpi.o mpic.o elapse.o
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+ $(AR) $@ mpi.o mpic.o elapse.o
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$(RANLIB) $@
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+libmpiseq$(PLAT).so: mpi.o mpic.o elapse.o
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+ $(FC) -shared $^ -Wl,-soname,libmpiseq$(PLAT)-5.2.1.so -o libmpiseq$(PLAT)-5.2.1.so -Wl,-z,defs
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.f.o:
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- $(FC) $(OPTF) -c $*.f $(OUTF)$*.o
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+ $(FC) $(OPTF) -fPIC -c $*.f $(OUTF)$*.o
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.c.o:
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- $(CC) $(OPTC) $(CDEFS) -I. -c $*.c $(OUTC)$*.o
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+ $(CC) $(OPTC) $(CDEFS) -I. -fPIC -c $*.c $(OUTC)$*.o
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clean:
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- $(RM) *.o *$(LIBEXT)
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+ $(RM) *.o *.a *.so
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Index: mumps/Makefile
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===================================================================
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--- mumps.orig/Makefile
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+++ mumps/Makefile
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@@ -60,6 +60,7 @@ requiredobj: Makefile.inc $(LIBSEQNEEDED
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libseqneeded:
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(cd libseq; $(MAKE))
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+ cp libseq/lib* $(libdir)
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# Build the libpord.a library and copy it into $(topdir)/lib
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$(libdir)/libpord$(PLAT).a:
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@ -1,63 +0,0 @@
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Create a shared version of the MUMPS library.
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Index: mumps/src/Makefile
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===================================================================
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--- mumps.orig/src/Makefile
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+++ mumps/src/Makefile
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@@ -23,8 +23,10 @@ z:
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include $(topdir)/Makefile.inc
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-mumps_lib: $(libdir)/libmumps_common$(PLAT)$(LIBEXT) \
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- $(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT)
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+mumps_lib: $(libdir)/libmumps_common$(PLAT).a \
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+ $(libdir)/libmumps_common$(PLAT).so \
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+ $(libdir)/lib$(ARITH)mumps$(PLAT).a \
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+ $(libdir)/lib$(ARITH)mumps$(PLAT).so
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OBJS_COMMON_MOD = \
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lr_common.o \
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@@ -167,14 +169,22 @@ OBJS_OTHER = \
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$(ARITH)tools.o\
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$(ARITH)type3_root.o
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-$(libdir)/libmumps_common$(PLAT)$(LIBEXT): $(OBJS_COMMON_MOD) $(OBJS_COMMON_OTHER)
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- $(AR)$@ $?
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+$(libdir)/libmumps_common$(PLAT).a: $(OBJS_COMMON_MOD) $(OBJS_COMMON_OTHER)
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+ $(AR) $@ $?
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$(RANLIB) $@
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-$(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT): $(OBJS_MOD) $(OBJS_OTHER)
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- $(AR)$@ $?
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+$(libdir)/libmumps_common$(PLAT).so: $(OBJS_COMMON_MOD) $(OBJS_COMMON_OTHER)
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+ $(FC) -shared $^ -Wl,-soname,libmumps_common$(PLAT)-5.2.1.so -L$(libdir) $(LORDERINGS) -lpthread $(MPIFLIB) $(MPICLIB) $(LEXTRAS) -o $(libdir)/libmumps_common$(PLAT)-5.2.1.so -Wl,-z,defs
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+ ln -s libmumps_common$(PLAT)-5.2.1.so $@
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+
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+$(libdir)/lib$(ARITH)mumps$(PLAT).a: $(OBJS_MOD) $(OBJS_OTHER)
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+ $(AR) $@ $?
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$(RANLIB) $@
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+$(libdir)/lib$(ARITH)mumps$(PLAT).so: $(OBJS_MOD) $(OBJS_OTHER)
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+ $(FC) -shared $^ -Wl,-soname,lib$(ARITH)mumps$(PLAT)-5.2.1.so -L$(libdir) -lmumps_common$(PLAT) $(LORDERINGS) $(MPIFLIB) $(LEXTRAS) $(LIBBLAS) $(SCALAP) $(LAPACK) -o $(libdir)/lib$(ARITH)mumps$(PLAT)-5.2.1.so -Wl,-z,defs
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+ ln -s lib$(ARITH)mumps$(PLAT)-5.2.1.so $@
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+
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# Dependencies between modules:
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$(ARITH)mumps_load.o: $(ARITH)mumps_comm_buffer.o \
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$(ARITH)mumps_struc_def.o \
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@@ -290,13 +300,13 @@ $(OBJS_OTHER):$(OBJS_COMMON_MOD) $(OBJS_
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.SUFFIXES: .c .F .o
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.F.o:
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- $(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include -c $*.F $(OUTF)$*.o
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+ $(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include -fPIC -c $*.F $(OUTF)$*.o
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.c.o:
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- $(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC) $(ORDERINGSC) -c $*.c $(OUTC)$*.o
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+ $(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC) $(ORDERINGSC) -fPIC -c $*.c $(OUTC)$*.o
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$(ARITH)mumps_c.o: mumps_c.c
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$(CC) $(OPTC) $(INCS) $(CDEFS) -DMUMPS_ARITH=MUMPS_ARITH_$(ARITH) \
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- $(IORDERINGSC) $(ORDERINGSC) -I../include -c mumps_c.c $(OUTC)$@
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+ $(IORDERINGSC) $(ORDERINGSC) -I../include -fPIC -c mumps_c.c $(OUTC)$@
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clean:
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@ -1,77 +0,0 @@
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Create static and shared versions of the PORD library.
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Index: mumps/PORD/lib/Makefile
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===================================================================
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--- mumps.orig/PORD/lib/Makefile
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+++ mumps/PORD/lib/Makefile
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@@ -9,7 +9,7 @@
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INCLUDES = -I../include
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-COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS)
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+COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS) -fPIC
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OBJS = graph.o gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o \
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multisector.o gelim.o bucket.o tree.o \
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@@ -24,12 +24,16 @@ OBJS = graph.o gbipart.o gbisect.o ddcre
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.c.o:
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$(CC) $(COPTIONS) -c $*.c $(OUTC)$*.o
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-libpord$(LIBEXT):$(OBJS)
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- $(AR)$@ $(OBJS)
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+libpord$(PLAT).a:$(OBJS)
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+ $(AR) $@ $(OBJS)
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$(RANLIB) $@
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+libpord$(PLAT).so: $(OBJS)
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+ $(CC) -shared $(OBJS) -Wl,-soname,libpord$(PLAT)-5.2.1.so -o libpord$(PLAT)-5.2.1.so -Wl,-z,defs
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+ ln -s libpord$(PLAT)-5.2.1.so $@
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+
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clean:
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rm -f *.o
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realclean:
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- rm -f *.o libpord.a
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+ rm -f *.o libpord*.a *.so
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Index: mumps/Makefile
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===================================================================
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--- mumps.orig/Makefile
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+++ mumps/Makefile
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@@ -54,7 +54,7 @@ dexamples: d
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multi_example: s d c z
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(cd examples ; $(MAKE) multi)
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-requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT)$(LIBEXT)
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+requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT).a $(libdir)/libpord$(PLAT).so
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# dummy MPI library (sequential version)
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@@ -62,19 +62,25 @@ libseqneeded:
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(cd libseq; $(MAKE))
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# Build the libpord.a library and copy it into $(topdir)/lib
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-$(libdir)/libpord$(PLAT)$(LIBEXT):
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+$(libdir)/libpord$(PLAT).a:
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if [ "$(LPORDDIR)" != "" ] ; then \
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cd $(LPORDDIR); \
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$(MAKE) CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" RANLIB="$(RANLIB)" OUTC="$(OUTC)" LIBEXT=$(LIBEXT); \
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fi;
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if [ "$(LPORDDIR)" != "" ] ; then \
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- cp $(LPORDDIR)/libpord$(LIBEXT) $@; \
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+ cp $(LPORDDIR)/libpord$(PLAT).a $@; \
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fi;
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+$(libdir)/libpord$(PLAT).so:
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+ if [ "$(LPORDDIR)" != "" ] ; then \
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+ cd $(LPORDDIR); make CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" ARFUNCT= RANLIB="$(RANLIB)" libpord$(PLAT).so; fi;
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+ if [ "$(LPORDDIR)" != "" ] ; then \
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+ cp -a $(LPORDDIR)/libpord*.so lib/; fi;
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+
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clean:
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(cd src; $(MAKE) clean)
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(cd examples; $(MAKE) clean)
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- (cd $(libdir); $(RM) *$(PLAT)$(LIBEXT))
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+ (cd $(libdir); $(RM) *$(PLAT).a *$(PLAT).so)
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(cd libseq; $(MAKE) clean)
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if [ "$(LPORDDIR)" != "" ] ; then \
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cd $(LPORDDIR); $(MAKE) realclean; \
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Reference in New Issue