me
/
guix
Archived
1
0
Fork 0
Code

gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor). 

* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
master
Ricardo Wurmus 2019-03-06 21:29:20 +01:00
parent c3adc83054
commit b7d93cf508
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
2 changed files with 32 additions and 32 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

32
gnu/packages/bioconductor.scm
View File

@ -33,6 +33,38 @@
#:use-module (gnu packages statistics) #:use-module (gnu packages statistics)
#:use-module (gnu packages web)) #:use-module (gnu packages web))
(define-public r-bsgenome-celegans-ucsc-ce6
(package
(name "r-bsgenome-celegans-ucsc-ce6")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce6_"
version ".tar.gz"))
(sha256
(base32
"0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce6")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-dmelanogaster-ucsc-dm6 (define-public r-bsgenome-dmelanogaster-ucsc-dm6
(package (package
(name "r-bsgenome-dmelanogaster-ucsc-dm6") (name "r-bsgenome-dmelanogaster-ucsc-dm6")

32
gnu/packages/bioinformatics.scm
View File

@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
based on the knownGene track.") based on the knownGene track.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-bsgenome-celegans-ucsc-ce6
(package
(name "r-bsgenome-celegans-ucsc-ce6")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce6_"
version ".tar.gz"))
(sha256
(base32
"0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce6")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-celegans-ucsc-ce10 (define-public r-bsgenome-celegans-ucsc-ce10
(package (package
(name "r-bsgenome-celegans-ucsc-ce10") (name "r-bsgenome-celegans-ucsc-ce10")