gnu: Add r-aspli.
* gnu/packages/bioconductor.scm (r-aspli): New variable.
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@ -2317,6 +2317,54 @@ reproducible gene expression signatures capable of accurately distinguishing
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tumor samples from healthy controls.")
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tumor samples from healthy controls.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-aspli
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(package
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(name "r-aspli")
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(version "2.6.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "ASpli" version))
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(sha256
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(base32
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"1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz"))))
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(properties `((upstream-name . "ASpli")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-annotationdbi
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r-biocgenerics
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r-biocstyle
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r-data-table
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r-dt
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r-edger
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r-genomicalignments
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r-genomicfeatures
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r-genomicranges
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r-gviz
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r-htmltools
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r-igraph
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r-iranges
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r-limma
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r-mass
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r-pbmcapply
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r-rsamtools
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r-s4vectors
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r-tidyr
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r-upsetr))
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(home-page "https://bioconductor.org/packages/ASpli")
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(synopsis "Analysis of alternative splicing using RNA-Seq")
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(description
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"@dfn{AS} (alternative splicing) is a common mechanism of
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post-transcriptional gene regulation in eukaryotic organisms that expands the
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functional and regulatory diversity of a single gene by generating multiple
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mRNA isoforms that encode structurally and functionally distinct proteins.
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ASpli is an integrative pipeline and user-friendly R package that facilitates
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the analysis of changes in both annotated and novel AS events. ASpli
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integrates several independent signals in order to deal with the complexity
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that might arise in splicing patterns.")
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;; The authors didn't specify any GPL version in description or in the
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;; sources.
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(license (list license:gpl2+ license:gpl3+))))
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(define-public r-assessorf
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(define-public r-assessorf
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(package
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(package
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(name "r-assessorf")
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(name "r-assessorf")
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