gnu: Add bioparser.
* gnu/packages/bioinformatics.scm (bioparser): New variable.master
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@ -1354,6 +1354,42 @@ relying on a complex dependency tree.")
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used for storage and logging in bioinformatics tools.")
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used for storage and logging in bioinformatics tools.")
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(license license:expat)))
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(license license:expat)))
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(define-public bioparser
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(package
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(name "bioparser")
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(version "3.0.13")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/rvaser/bioparser")
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;; Corresponds to tag 3.0.13
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(commit "13341e6e0855c6b358ffcea6dad216e1009e1287")))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0c5p2dl8jb12ci9f427jzrmmm9cgvc1k4fxsn2ggkfsin6r1r82i"))))
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(build-system cmake-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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(invoke "./bin/bioparser_test")))))))
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(inputs
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`(("biosoup" ,biosoup)))
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(propagated-inputs
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`(("zlib" ,zlib)))
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(native-inputs
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`(("googletest" ,googletest)))
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(home-page "https://github.com/rvaser/bioparser")
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(synopsis "C++ library for parsing several formats in bioinformatics")
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(description "Bioparser is a C++ header only parsing library for several
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bioinformatics formats (FASTA/Q, MHAP/PAF/SAM), with support for zlib
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compressed files.")
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(license license:expat)))
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(define-public ciri-long
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(define-public ciri-long
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(package
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(package
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(name "ciri-long")
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(name "ciri-long")
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