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gnu: Add ritornello.

* gnu/packages/bioinformatics.scm (ritornello): New variable.
master
Ricardo Wurmus 2017-04-13 14:16:12 +02:00
parent 1dacc26956
commit b8fffd3a53
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1 changed files with 45 additions and 0 deletions

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@ -9223,3 +9223,48 @@ working with SAM and BAM files. Current parallelised functionality is
an important subset of samtools functionality, including view, index,
sort, markdup, and depth.")
(license license:gpl2+)))
(define-public ritornello
(package
(name "ritornello")
(version "1.0.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/KlugerLab/"
"Ritornello/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"02nik86gq9ljjriv6pamwlmqnfky3ads1fpklx6mc3hx6k40pg38"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there are no tests
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-samtools-references
(lambda* (#:key inputs #:allow-other-keys)
(substitute* '("src/SamStream.h"
"src/BufferedGenomeReader.h")
(("<sam.h>") "<samtools/sam.h>"))
#t))
(delete 'configure)
(replace 'install
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin/")))
(mkdir-p bin)
(install-file "bin/Ritornello" bin)
#t))))))
(inputs
`(("samtools" ,samtools-0.1)
("fftw" ,fftw)
("boost" ,boost)
("zlib" ,zlib)))
(home-page "https://github.com/KlugerLab/Ritornello")
(synopsis "Control-free peak caller for ChIP-seq data")
(description "Ritornello is a ChIP-seq peak calling algorithm based on
signal processing that can accurately call binding events without the need to
do a pair total DNA input or IgG control sample. It has been tested for use
with narrow binding events such as transcription factor ChIP-seq.")
(license license:gpl3+)))