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gnu: Use the non-deprecated TeX packages.

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This commit leaves 'dblatex' and 'texlive-hyperref' as users of
deprecated packages, but these have many dependents.

* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Use
non-deprecated TeX Live packages.
(velvet)[native-inputs]: Likewise.
* gnu/packages/chez.scm (chez-scheme)[native-inputs]: Likewise.
(chez-web)[native-inputs]: Likewise.
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Likewise.
* gnu/packages/guile-xyz.scm (emacsy)[native-inputs]: Likewise.
* gnu/packages/maths.scm (hypre)[native-inputs]: Likewise.
* gnu/packages/music.scm (lilypond)[native-inputs]: Likewise.
* gnu/packages/ocaml.scm (ocaml-bibtex2html)[native-inputs]: Likewise.
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]:
Likewise.
(python-matplotlib-documentation)[native-inputs]: Likewise.
(python-ipython-documentation)[native-inputs]: Likewise.
(python-nbconvert)[native-inputs]: Likewise.
(python-pypandoc)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Likewise.
* gnu/packages/tex.scm (texlive-pstool)[propagated-inputs]: Likewise.
(teximpatient)[native-inputs]: Likewise.
(texlive-latex-pgf)[propagated-inputs]: Likewise.
(texlive-beamer)[propagated-inputs]: Likewise.
This commit is contained in:
Ludovic Courtès 2021-09-06 21:53:32 +02:00
parent 3dc8052b51
commit b949f34f31
No known key found for this signature in database
GPG key ID: 090B11993D9AEBB5
11 changed files with 46 additions and 46 deletions
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6
gnu/packages/bioinformatics.scm
View file

@ -3110,9 +3110,9 @@ data and settings.")
`(("texlive" ,(texlive-updmap.cfg (list texlive-cm `(("texlive" ,(texlive-updmap.cfg (list texlive-cm
texlive-amsfonts texlive-amsfonts
texlive-latex-doi texlive-doi
texlive-latex-examplep texlive-latex-examplep
texlive-latex-hyperref texlive-hyperref
texlive-latex-ms texlive-latex-ms
texlive-latex-natbib texlive-latex-natbib
texlive-bibtex ; style files used by natbib texlive-bibtex ; style files used by natbib
@ -12776,7 +12776,7 @@ to an artifact/contaminant file.")
("zlib" ,zlib))) ("zlib" ,zlib)))
(native-inputs (native-inputs
`(("texlive" ,(texlive-updmap.cfg (list texlive-latex-graphics `(("texlive" ,(texlive-updmap.cfg (list texlive-latex-graphics
texlive-latex-hyperref))))) texlive-hyperref)))))
(home-page "https://www.ebi.ac.uk/~zerbino/velvet/") (home-page "https://www.ebi.ac.uk/~zerbino/velvet/")
(synopsis "Nucleic acid sequence assembler for very short reads") (synopsis "Nucleic acid sequence assembler for very short reads")
(description (description

10
gnu/packages/chez.scm
View file

@ -114,8 +114,8 @@
;; for docs ;; for docs
("stex" ,stex) ("stex" ,stex)
("xorg-rgb" ,xorg-rgb) ("xorg-rgb" ,xorg-rgb)
("texlive" ,(texlive-updmap.cfg (list texlive-latex-oberdiek ("texlive" ,(texlive-updmap.cfg (list texlive-oberdiek
texlive-generic-epsf))) texlive-epsf)))
("ghostscript" ,ghostscript) ("ghostscript" ,ghostscript)
("netpbm" ,netpbm))) ("netpbm" ,netpbm)))
(native-search-paths (native-search-paths
@ -316,10 +316,10 @@ and 32-bit PowerPC architectures.")
(native-inputs (native-inputs
`(("chez-scheme" ,chez-scheme) `(("chez-scheme" ,chez-scheme)
("ghostscript" ,ghostscript) ("ghostscript" ,ghostscript)
("texlive" ,(texlive-updmap.cfg (list texlive-latex-oberdiek ("texlive" ,(texlive-updmap.cfg (list texlive-oberdiek
texlive-generic-epsf texlive-epsf
texlive-metapost texlive-metapost
texlive-fonts-charter texlive-charter
texlive-pdftex texlive-pdftex
texlive-context texlive-context
texlive-cm texlive-cm

2
gnu/packages/engineering.scm
View file

@ -524,7 +524,7 @@ featuring various improvements and bug fixes.")))
;; FIXME: with texlive-tiny citation references are rendered as question ;; FIXME: with texlive-tiny citation references are rendered as question
;; marks. During the build warnings like these are printed: ;; marks. During the build warnings like these are printed:
;; LaTeX Warning: Citation `nabors91' on page 2 undefined on input line 3. ;; LaTeX Warning: Citation `nabors91' on page 2 undefined on input line 3.
`(("texlive" ,(texlive-updmap.cfg (list texlive-fonts-amsfonts))) `(("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts)))
("ghostscript" ,ghostscript))) ("ghostscript" ,ghostscript)))
(arguments (arguments
`(#:make-flags '("CC=gcc" "RM=rm" "SHELL=sh" "all") `(#:make-flags '("CC=gcc" "RM=rm" "SHELL=sh" "all")

2
gnu/packages/guile-xyz.scm
View file

@ -3313,7 +3313,7 @@ API.")
("perl" ,perl) ("perl" ,perl)
("pkg-config" ,pkg-config) ("pkg-config" ,pkg-config)
("texinfo" ,texinfo) ("texinfo" ,texinfo)
("texlive" ,(texlive-updmap.cfg (list texlive-generic-epsf))))) ("texlive" ,(texlive-updmap.cfg (list texlive-epsf)))))
(inputs (inputs
`(("dbus-glib" ,dbus-glib) `(("dbus-glib" ,dbus-glib)
("guile" ,guile-3.0) ("guile" ,guile-3.0)

4
gnu/packages/maths.scm
View file

@ -5100,7 +5100,7 @@ set.")
texlive-latex-framed texlive-latex-framed
texlive-latex-geometry texlive-latex-geometry
texlive-latex-hanging texlive-latex-hanging
texlive-latex-hyperref texlive-hyperref
texlive-latex-multirow texlive-latex-multirow
texlive-latex-natbib texlive-latex-natbib
texlive-latex-needspace texlive-latex-needspace
@ -5112,7 +5112,7 @@ set.")
texlive-latex-tocloft texlive-latex-tocloft
texlive-latex-upquote texlive-latex-upquote
texlive-latex-varwidth texlive-latex-varwidth
texlive-latex-wasysym texlive-wasysym
texlive-latex-wrapfig))))) texlive-latex-wrapfig)))))
(inputs (inputs
`(("blas" ,openblas) `(("blas" ,openblas)

2
gnu/packages/music.scm
View file

@ -1535,7 +1535,7 @@ and auto-mapping slices to MIDI note numbers.")
("imagemagick" ,imagemagick) ("imagemagick" ,imagemagick)
("netpbm" ,netpbm) ;for pngtopnm ("netpbm" ,netpbm) ;for pngtopnm
("texlive" ,(texlive-updmap.cfg (list texlive-metapost ("texlive" ,(texlive-updmap.cfg (list texlive-metapost
texlive-generic-epsf texlive-epsf
texlive-lh texlive-lh
texlive-latex-cyrillic))) texlive-latex-cyrillic)))
("texinfo" ,texinfo) ("texinfo" ,texinfo)

2
gnu/packages/ocaml.scm
View file

@ -7380,7 +7380,7 @@ browsers and Node.js.")
`(("which" ,which) `(("which" ,which)
("texlive" ,(texlive-updmap.cfg ("texlive" ,(texlive-updmap.cfg
(list texlive-fonts-ec texlive-preprint (list texlive-fonts-ec texlive-preprint
texlive-latex-hyperref texlive-bibtex))))) texlive-hyperref texlive-bibtex)))))
(propagated-inputs (propagated-inputs
`(("hevea" ,hevea))) `(("hevea" ,hevea)))
(home-page "https://www.lri.fr/~filliatr/bibtex2html/") (home-page "https://www.lri.fr/~filliatr/bibtex2html/")

2
gnu/packages/plotutils.scm
View file

@ -230,7 +230,7 @@ colors, styles, options and details.")
texlive-latex-base texlive-latex-base
texlive-latex-geometry texlive-latex-geometry
texlive-latex-graphics texlive-latex-graphics
texlive-latex-oberdiek ; for ifluatex texlive-oberdiek ;for ifluatex
texlive-latex-parskip texlive-latex-parskip
texlive-tex-texinfo))))) texlive-tex-texinfo)))))
(inputs (inputs

42
gnu/packages/python-xyz.scm
View file

@ -5287,16 +5287,16 @@ color scales, and color space conversion easy. It has support for:
("pkg-config" ,pkg-config) ("pkg-config" ,pkg-config)
("python-sphinx" ,python-sphinx) ("python-sphinx" ,python-sphinx)
("python-numpydoc" ,python-numpydoc) ("python-numpydoc" ,python-numpydoc)
("texlive" ,(texlive-updmap.cfg (list texlive-fonts-cm-super ("texlive" ,(texlive-updmap.cfg (list texlive-cm-super
texlive-fonts-ec texlive-fonts-ec
texlive-generic-ifxetex texlive-generic-iftex
texlive-generic-pdftex texlive-pdftex
texlive-amsfonts texlive-amsfonts
texlive-latex-capt-of texlive-latex-capt-of
texlive-latex-cmap texlive-latex-cmap
texlive-latex-environ texlive-latex-environ
texlive-latex-eqparbox texlive-latex-eqparbox
texlive-latex-etoolbox texlive-etoolbox
texlive-latex-expdlist texlive-latex-expdlist
texlive-latex-fancyhdr texlive-latex-fancyhdr
texlive-latex-fancyvrb texlive-latex-fancyvrb
@ -5305,11 +5305,11 @@ color scales, and color space conversion easy. It has support for:
texlive-latex-framed texlive-latex-framed
texlive-latex-geometry texlive-latex-geometry
texlive-latex-graphics texlive-latex-graphics
texlive-latex-hyperref texlive-hyperref
texlive-latex-mdwtools texlive-latex-mdwtools
texlive-latex-multirow texlive-latex-multirow
texlive-latex-needspace texlive-latex-needspace
texlive-latex-oberdiek texlive-oberdiek
texlive-latex-parskip texlive-latex-parskip
texlive-latex-preview texlive-latex-preview
texlive-latex-tabulary texlive-latex-tabulary
@ -5318,7 +5318,7 @@ color scales, and color space conversion easy. It has support for:
texlive-latex-trimspaces texlive-latex-trimspaces
texlive-latex-ucs texlive-latex-ucs
texlive-latex-upquote texlive-latex-upquote
texlive-latex-url texlive-url
texlive-latex-varwidth texlive-latex-varwidth
texlive-latex-wrapfig))) texlive-latex-wrapfig)))
("texinfo" ,texinfo) ("texinfo" ,texinfo)
@ -5842,11 +5842,11 @@ toolkits.")
texlive-latex-type1cm texlive-latex-type1cm
texlive-latex-ucs texlive-latex-ucs
texlive-generic-pdftex texlive-pdftex
texlive-fonts-ec texlive-fonts-ec
texlive-fonts-adobe-times texlive-times
texlive-fonts-txfonts))) texlive-txfonts)))
("texinfo" ,texinfo) ("texinfo" ,texinfo)
,@(package-native-inputs python-matplotlib))) ,@(package-native-inputs python-matplotlib)))
(arguments (arguments
@ -8134,13 +8134,13 @@ computing.")
;; FIXME: It's possible that a smaller union would work just as well. ;; FIXME: It's possible that a smaller union would work just as well.
("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts ("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts
texlive-fonts-ec texlive-fonts-ec
texlive-generic-ifxetex texlive-generic-iftex
texlive-pdftex texlive-pdftex
texlive-latex-capt-of texlive-latex-capt-of
texlive-latex-cmap texlive-latex-cmap
texlive-latex-environ texlive-latex-environ
texlive-latex-eqparbox texlive-latex-eqparbox
texlive-latex-etoolbox texlive-etoolbox
texlive-latex-expdlist texlive-latex-expdlist
texlive-latex-fancyhdr texlive-latex-fancyhdr
texlive-latex-fancyvrb texlive-latex-fancyvrb
@ -8149,11 +8149,11 @@ computing.")
texlive-latex-framed texlive-latex-framed
texlive-latex-geometry texlive-latex-geometry
texlive-latex-graphics texlive-latex-graphics
texlive-latex-hyperref texlive-hyperref
texlive-latex-mdwtools texlive-latex-mdwtools
texlive-latex-multirow texlive-latex-multirow
texlive-latex-needspace texlive-latex-needspace
texlive-latex-oberdiek texlive-oberdiek
texlive-latex-parskip texlive-latex-parskip
texlive-latex-preview texlive-latex-preview
texlive-latex-tabulary texlive-latex-tabulary
@ -8162,7 +8162,7 @@ computing.")
texlive-latex-trimspaces texlive-latex-trimspaces
texlive-latex-ucs texlive-latex-ucs
texlive-latex-upquote texlive-latex-upquote
texlive-latex-url texlive-url
texlive-latex-varwidth texlive-latex-varwidth
texlive-latex-wrapfig))) texlive-latex-wrapfig)))
("texinfo" ,texinfo))))) ("texinfo" ,texinfo)))))
@ -11198,18 +11198,18 @@ time.")
texlive-eurosym texlive-eurosym
texlive-fonts-rsfs texlive-fonts-rsfs
texlive-generic-ulem texlive-generic-ulem
texlive-iftex texlive-generic-iftex
texlive-jknappen texlive-jknappen
texlive-latex-amsmath texlive-latex-amsmath
texlive-latex-enumitem texlive-latex-enumitem
texlive-latex-fancyvrb texlive-latex-fancyvrb
texlive-latex-float texlive-latex-float
texlive-latex-fontspec texlive-fontspec
texlive-latex-geometry texlive-latex-geometry
texlive-latex-hyperref texlive-hyperref
texlive-latex-jknapltx texlive-latex-jknapltx
texlive-latex-ms texlive-latex-ms
texlive-latex-oberdiek texlive-oberdiek
texlive-latex-parskip texlive-latex-parskip
texlive-latex-trimspaces texlive-latex-trimspaces
texlive-latex-upquote texlive-latex-upquote
@ -24948,8 +24948,8 @@ By default it uses the open Python vulnerability database Safety DB.")
(native-inputs (native-inputs
`(("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts `(("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts
texlive-fonts-ec texlive-fonts-ec
texlive-latex-hyperref texlive-hyperref
texlive-latex-oberdiek texlive-oberdiek
texlive-lm texlive-lm
texlive-xcolor))))) texlive-xcolor)))))
(arguments (arguments

6
gnu/packages/statistics.scm
View file

@ -349,11 +349,11 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\
texlive-latex-base texlive-latex-base
texlive-latex-fancyvrb texlive-latex-fancyvrb
texlive-latex-graphics texlive-latex-graphics
texlive-latex-hyperref texlive-hyperref
texlive-latex-oberdiek texlive-oberdiek
texlive-latex-tools texlive-latex-tools
texlive-latex-upquote texlive-latex-upquote
texlive-latex-url texlive-url
texlive-latex-xkeyval))) texlive-latex-xkeyval)))
("tzdata" ,tzdata-for-tests) ("tzdata" ,tzdata-for-tests)
("xz" ,xz))) ("xz" ,xz)))

14
gnu/packages/tex.scm
View file

@ -4563,7 +4563,7 @@ rotated.")
#:trivial? #t)) #:trivial? #t))
(propagated-inputs (propagated-inputs
`(("texlive-latex-bigfoot" ,texlive-latex-bigfoot) ; for suffix `(("texlive-latex-bigfoot" ,texlive-latex-bigfoot) ; for suffix
("texlive-latex-filemod" ,texlive-latex-filemod) ("texlive-filemod" ,texlive-filemod)
("texlive-latex-graphics" ,texlive-latex-graphics) ("texlive-latex-graphics" ,texlive-latex-graphics)
("texlive-latex-ifplatform" ,texlive-latex-ifplatform) ("texlive-latex-ifplatform" ,texlive-latex-ifplatform)
("texlive-latex-l3kernel" ,texlive-latex-l3kernel) ; for expl3 ("texlive-latex-l3kernel" ,texlive-latex-l3kernel) ; for expl3
@ -7134,10 +7134,10 @@ develop documents with LaTeX, in a single application.")
#t))))) #t)))))
(native-inputs (native-inputs
`(("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts `(("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts
texlive-fonts-adobe-palatino texlive-palatino
texlive-fonts-adobe-zapfding texlive-zapfding
texlive-knuth-lib texlive-knuth-lib
texlive-fonts-mflogo-font texlive-mflogo-font
texlive-pdftex))) texlive-pdftex)))
("automake" ,automake))) ("automake" ,automake)))
(home-page "https://www.gnu.org/software/teximpatient/") (home-page "https://www.gnu.org/software/teximpatient/")
@ -7487,7 +7487,7 @@ striking out (line through words) and crossing out (/// over words).")
(base32 (base32
"05zdq7y3am109m5534ahqqp9x5iar3ha68v1r4zkrdly2mijxz2j")))))) "05zdq7y3am109m5534ahqqp9x5iar3ha68v1r4zkrdly2mijxz2j"))))))
(propagated-inputs (propagated-inputs
`(("texlive-latex-xcolor" ,texlive-latex-xcolor))) `(("texlive-xcolor" ,texlive-xcolor)))
(arguments (arguments
`(#:modules ((guix build utils)) `(#:modules ((guix build utils))
#:builder #:builder
@ -8119,9 +8119,9 @@ for a wealth of support information.")
"091n27n4l3iac911bvmpp735ffryyzaq46mkclgn3q9jsvc4ngiv") "091n27n4l3iac911bvmpp735ffryyzaq46mkclgn3q9jsvc4ngiv")
#:trivial? #t)) #:trivial? #t))
(propagated-inputs (propagated-inputs
`(("texlive-latex-hyperref" ,texlive-latex-hyperref) `(("texlive-hyperref" ,texlive-hyperref)
("texlive-oberdiek" ,texlive-oberdiek) ("texlive-oberdiek" ,texlive-oberdiek)
("texlive-latex-etoolbox" ,texlive-latex-etoolbox) ("texlive-etoolbox" ,texlive-etoolbox)
("texlive-latex-pgf" ,texlive-latex-pgf))) ("texlive-latex-pgf" ,texlive-latex-pgf)))
(home-page "https://www.ctan.org/pkg/beamer") (home-page "https://www.ctan.org/pkg/beamer")
(synopsis "LaTeX class for producing presentations and slides") (synopsis "LaTeX class for producing presentations and slides")