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gnu: Add r-demuxmix.

* gnu/packages/bioinformatics.scm (r-demuxmix): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
master
Navid Afkhami 2023-04-16 12:09:48 +02:00 committed by Ricardo Wurmus
parent 2b2068a083
commit b95cd3f969
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1 changed files with 31 additions and 0 deletions

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@ -9708,6 +9708,37 @@ multiplexed single cell datasets. It is built on a statistical model of tag
read counts derived from the physical mechanism of tag cross-contamination.")
(license license:cc0))))
(define-public r-demuxmix
(let ((commit "09a7918ca6e0cd23e6bbaed2b97388bc499e248e")
(revision "1"))
(package
(name "r-demuxmix")
(version (git-version "1.1.1" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/huklein/demuxmix")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"03kfnns7m2447jsc3xplyv9qx8hvvdjmii7j837g3bb6smyxss96"))))
(properties `((upstream-name . "demuxmix")))
(build-system r-build-system)
(propagated-inputs (list r-ggplot2 r-gridextra r-mass r-matrix))
(native-inputs (list r-knitr))
(home-page "https://github.com/huklein/demuxmix")
(synopsis
"Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models")
(description
"This package is used for demultiplexing single-cell sequencing
experiments of pooled cells. These cells are labeled with barcode
oligonucleotides. The package implements methods to fit regression mixture
models for a probabilistic classification of cells, including multiplet
detection. Demultiplexing error rates can be estimated, and methods for
quality control are provided.")
(license license:artistic2.0))))
(define-public gdc-client
(package
(name "gdc-client")