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gnu: r-dismo: Replace bundled jars. 

Fixes <https://issues.guix.gnu.org/63783>.

* gnu/packages/cran.scm (r-dismo)[source]: Delete bundled jars.
[inputs]: Add java-maxent.
[native-inputs]: Add JDK and zip.
[arguments]: Add phases 'build-jars and 'strip-jar-timestamps.
master
Ricardo Wurmus 2023-06-02 11:31:40 +02:00
parent 341b4b2a97
commit bb27e3b8b1
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1 changed files with 30 additions and 1 deletions
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@ -37368,11 +37368,40 @@ to archive and assign DOIs to data, software, figures, and more.")
(uri (cran-uri "dismo" version))
(sha256
(base32
"1msc75xnc9lbnn8pivd5j4jvb1b9p3xgybfm2ak2mpb2aplz5837"))))
"1msc75xnc9lbnn8pivd5j4jvb1b9p3xgybfm2ak2mpb2aplz5837"))
(snippet
'(for-each delete-file
(list "inst/java/dismo.jar"
"inst/java/maxent.jar")))))
(properties `((upstream-name . "dismo")))
(build-system r-build-system)
(arguments
(list
#:modules '((guix build utils)
(guix build r-build-system)
((guix build ant-build-system) #:prefix java:))
#:imported-modules
(cons '(guix build ant-build-system)
%r-build-system-modules)
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'build-jars
(lambda* (#:key inputs #:allow-other-keys)
(let ((maxent (search-input-file inputs
"/share/java/maxent/maxent.jar")))
(install-file maxent "inst/java/")
(with-directory-excursion "java"
(invoke "javac" "-cp" maxent "mebridge.java")
(invoke "jar" "cvf" "../inst/java/dismo.jar"
"mebridge.class")))))
(add-after 'install 'strip-jar-timestamps
(assoc-ref java:%standard-phases 'strip-jar-timestamps)))))
(inputs
(list java-maxent))
(propagated-inputs
(list r-raster r-rcpp r-sp r-terra))
(native-inputs
(list `(,icedtea-8 "jdk") zip))
(home-page "https://rspatial.org/raster/sdm/")
(synopsis "Species distribution modeling")
(description