gnu: Remove poretools.
* gnu/packages/bioinformatics.scm (poretools): Delete variable.
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@ -12909,42 +12909,6 @@ of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR
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Barcoding Kit or Rapid Barcoding Kit.")
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Barcoding Kit or Rapid Barcoding Kit.")
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(license license:gpl3+))))
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(license license:gpl3+))))
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(define-public poretools
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;; The latest release was in 2016 and the latest commit is from 2017
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;; the recommended way to install is to clone the git repository
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;; https://poretools.readthedocs.io/en/latest/content/installation.html
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(let ((commit "e426b1f09e86ac259a00c261c79df91510777407")
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(revision "1"))
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(package
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(name "poretools")
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(version (git-version "0.6.0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/arq5x/poretools")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0bglj833wxpp3cq430p1d3xp085ls221js2y90w7ir2x5ay8l7am"))))
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(build-system python-build-system)
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;; requires python >=2.7, <3.0, and the same for python dependencies
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(arguments `(#:python ,python-2))
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(inputs
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(list hdf5))
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(propagated-inputs
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(list python2-dateutil python2-h5py python2-matplotlib
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python2-pandas python2-seaborn))
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(home-page "https://poretools.readthedocs.io")
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(synopsis "Toolkit for working with nanopore sequencing data")
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(description
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"The MinION from Oxford Nanopore Technologies is a nanopore sequencer.
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This @code{poretools} package is a flexible toolkit for exploring datasets
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generated by nanopore sequencing devices for the purposes of quality control and
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downstream analysis. Poretools operates directly on the native FAST5, a variant
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of the Hierarchical Data Format (HDF5) standard.")
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(license license:expat))))
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(define-public jamm
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(define-public jamm
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(package
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(package
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(name "jamm")
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(name "jamm")
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