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gnu: Remove poretools.

* gnu/packages/bioinformatics.scm (poretools): Delete variable.
Maxim Cournoyer 2022-04-29 13:35:55 -04:00
parent bcdd45be6f
commit bb35b50adc
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1 changed files with 0 additions and 36 deletions

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@ -12909,42 +12909,6 @@ of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR
Barcoding Kit or Rapid Barcoding Kit.") Barcoding Kit or Rapid Barcoding Kit.")
(license license:gpl3+)))) (license license:gpl3+))))
(define-public poretools
;; The latest release was in 2016 and the latest commit is from 2017
;; the recommended way to install is to clone the git repository
;; https://poretools.readthedocs.io/en/latest/content/installation.html
(let ((commit "e426b1f09e86ac259a00c261c79df91510777407")
(revision "1"))
(package
(name "poretools")
(version (git-version "0.6.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/arq5x/poretools")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0bglj833wxpp3cq430p1d3xp085ls221js2y90w7ir2x5ay8l7am"))))
(build-system python-build-system)
;; requires python >=2.7, <3.0, and the same for python dependencies
(arguments `(#:python ,python-2))
(inputs
(list hdf5))
(propagated-inputs
(list python2-dateutil python2-h5py python2-matplotlib
python2-pandas python2-seaborn))
(home-page "https://poretools.readthedocs.io")
(synopsis "Toolkit for working with nanopore sequencing data")
(description
"The MinION from Oxford Nanopore Technologies is a nanopore sequencer.
This @code{poretools} package is a flexible toolkit for exploring datasets
generated by nanopore sequencing devices for the purposes of quality control and
downstream analysis. Poretools operates directly on the native FAST5, a variant
of the Hierarchical Data Format (HDF5) standard.")
(license license:expat))))
(define-public jamm (define-public jamm
(package (package
(name "jamm") (name "jamm")