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@ -4692,6 +4692,46 @@ spent loading the full derfinder package when running the F-statistics
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calculation in parallel.")
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calculation in parallel.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-dmrcate
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(package
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(name "r-dmrcate")
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(version "2.12.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "DMRcate" version))
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(sha256
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(base32
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"0iphlsbam5fcxbj5j0cmqk3wz5ykwz0mvk3qbrhzxbpf2h4w2qib"))))
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(properties `((upstream-name . "DMRcate")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-bsseq
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r-dss
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r-edger
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r-experimenthub
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r-genomeinfodb
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r-genomicranges
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r-gviz
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r-iranges
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r-limma
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r-minfi
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r-missmethyl
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r-plyr
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r-s4vectors
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/DMRcate")
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(synopsis "Methylation array and sequencing spatial analysis methods")
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(description
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"This is a package for de novo identification and extraction of
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@dfn{differentially methylated regions} (DMRs) from the human genome using
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@dfn{Whole Genome Bisulfite Sequencing} (WGBS) and Illumina Infinium
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Array (450K and EPIC) data. It provides functionality for filtering probes
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possibly confounded by SNPs and cross-hybridisation. It includes
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@code{GRanges} generation and plotting functions.")
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;; GPLv3 with additional liability disclaimer.
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(license license:gpl3)))
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(define-public r-drimseq
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(define-public r-drimseq
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(package
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(package
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(name "r-drimseq")
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(name "r-drimseq")
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