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gnu: Add r-dmrcate.

* gnu/packages/bioconductor.scm (r-dmrcate): New variable.
master
Ricardo Wurmus 2023-03-30 14:22:27 +02:00
parent a969d91ca5
commit bd35053677
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@ -4692,6 +4692,46 @@ spent loading the full derfinder package when running the F-statistics
calculation in parallel.") calculation in parallel.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-dmrcate
(package
(name "r-dmrcate")
(version "2.12.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "DMRcate" version))
(sha256
(base32
"0iphlsbam5fcxbj5j0cmqk3wz5ykwz0mvk3qbrhzxbpf2h4w2qib"))))
(properties `((upstream-name . "DMRcate")))
(build-system r-build-system)
(propagated-inputs
(list r-bsseq
r-dss
r-edger
r-experimenthub
r-genomeinfodb
r-genomicranges
r-gviz
r-iranges
r-limma
r-minfi
r-missmethyl
r-plyr
r-s4vectors
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/DMRcate")
(synopsis "Methylation array and sequencing spatial analysis methods")
(description
"This is a package for de novo identification and extraction of
@dfn{differentially methylated regions} (DMRs) from the human genome using
@dfn{Whole Genome Bisulfite Sequencing} (WGBS) and Illumina Infinium
Array (450K and EPIC) data. It provides functionality for filtering probes
possibly confounded by SNPs and cross-hybridisation. It includes
@code{GRanges} generation and plotting functions.")
;; GPLv3 with additional liability disclaimer.
(license license:gpl3)))
(define-public r-drimseq (define-public r-drimseq
(package (package
(name "r-drimseq") (name "r-drimseq")