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gnu: Add r-anndatar.

* gnu/packages/bioinformatics.scm (r-anndatar): New variable.

Change-Id: I6060c5c15a46c064aa03ec2431a72ea88f925706
master
Ricardo Wurmus 2024-05-13 16:12:00 +02:00
parent 7b0f145802
commit be235a3092
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GPG Key ID: 197A5888235FACAC
1 changed files with 29 additions and 0 deletions

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@ -723,6 +723,35 @@ alignment-free, it runs much faster and also easier to use.")
and utilities for PacBio C++ applications.") and utilities for PacBio C++ applications.")
(license license:bsd-3))) (license license:bsd-3)))
(define-public r-anndatar
(let ((commit "5c3eb7e498d0d9bf1c522ad66f4eb8ad277238b6")
(revision "1"))
(package
(name "r-anndatar")
(version (git-version "0.99.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/scverse/anndataR")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0sx87i8cb4p08ihgpgflxs0fhkr1kw6lxvky4w766rq7wqy41cgk"))))
(properties `((upstream-name . "anndataR")))
(build-system r-build-system)
(propagated-inputs (list r-matrix r-r6))
(native-inputs (list r-knitr))
(home-page "https://github.com/scverse/anndataR")
(synopsis "AnnData interoperability in R")
(description
"This package aims to bring the power and flexibility of @code{AnnData}
to the R ecosystem, allowing you to effortlessly manipulate and analyze your
single-cell data. This package lets you work with backed h5ad and zarr files,
directly access various slots (e.g. X, obs, var), or convert the data into
@code{SingleCellExperiment} and Seurat objects.")
(license license:expat))))
(define-public r-bedtorch (define-public r-bedtorch
(let ((commit "f5ff4f83b94f59eac660333c64e4b2f296b35cea") (let ((commit "f5ff4f83b94f59eac660333c64e4b2f296b35cea")
(revision "1")) (revision "1"))