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gnu: python2-pbcore: Remove python2-sphinx dependency. 

* gnu/packages/bioinformatics.scm (python2-pbcore)[arguments]: Add #:phases.
[native-inputs]: Remove PYTHON2-SPHINX.
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Marius Bakke 2020-02-12 21:16:09 +01:00
parent 2537ce68b0
commit bf71edd3df
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1 changed files with 12 additions and 3 deletions
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gnu/packages/bioinformatics.scm
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@ -5,7 +5,7 @@
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2016, 2020 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
@ -4733,7 +4733,17 @@ interrupted by stop codons. OrfM finds and prints these ORFs.")
(base32
"1kjmv891d6qbpp4shhhvkl02ff4q5xlpnls2513sm2cjcrs52f1i"))))
(build-system python-build-system)
(arguments `(#:python ,python-2)) ; pbcore requires Python 2.7
(arguments
`(#:python ,python-2 ;pbcore < 2.0 requires Python 2.7
#:phases (modify-phases %standard-phases
(add-after 'unpack 'remove-sphinx-dependency
(lambda _
;; Sphinx is only required for documentation tests, which
;; we do not run; furthermore it depends on python2-sphinx
;; which is no longer maintained.
(substitute* "requirements-dev.txt"
(("^sphinx") ""))
#t)))))
(propagated-inputs
`(("python-cython" ,python2-cython)
("python-numpy" ,python2-numpy)
@ -4741,7 +4751,6 @@ interrupted by stop codons. OrfM finds and prints these ORFs.")
("python-h5py" ,python2-h5py)))
(native-inputs
`(("python-nose" ,python2-nose)
("python-sphinx" ,python2-sphinx)
("python-pyxb" ,python2-pyxb)))
(home-page "https://pacificbiosciences.github.io/pbcore/")
(synopsis "Library for reading and writing PacBio data files")