gnu: r-biomart: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biomart): Move from here... * gnu/packages/bioconductor.scm (r-biomart): ...to here.
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					 2 changed files with 38 additions and 38 deletions
				
			
		|  | @ -1621,6 +1621,44 @@ databases.  Packages produced are intended to be used with AnnotationDbi.") | |||
| on Bioconductor or which replace R functions.") | ||||
|     (license license:artistic2.0))) | ||||
| 
 | ||||
| (define-public r-biomart | ||||
|   (package | ||||
|     (name "r-biomart") | ||||
|     (version "2.46.3") | ||||
|     (source (origin | ||||
|               (method url-fetch) | ||||
|               (uri (bioconductor-uri "biomaRt" version)) | ||||
|               (sha256 | ||||
|                (base32 | ||||
|                 "0gwmd0ykpv0gyh34c56g5m12lil20fvig49f3ih1jxrxf3q4wmq7")))) | ||||
|     (properties | ||||
|      `((upstream-name . "biomaRt"))) | ||||
|     (build-system r-build-system) | ||||
|     (propagated-inputs | ||||
|      `(("r-annotationdbi" ,r-annotationdbi) | ||||
|        ("r-biocfilecache" ,r-biocfilecache) | ||||
|        ("r-httr" ,r-httr) | ||||
|        ("r-openssl" ,r-openssl) | ||||
|        ("r-progress" ,r-progress) | ||||
|        ("r-rappdirs" ,r-rappdirs) | ||||
|        ("r-stringr" ,r-stringr) | ||||
|        ("r-xml" ,r-xml) | ||||
|        ("r-xml2" ,r-xml2))) | ||||
|     (native-inputs | ||||
|      `(("r-knitr" ,r-knitr))) | ||||
|     (home-page "https://bioconductor.org/packages/biomaRt") | ||||
|     (synopsis "Interface to BioMart databases") | ||||
|     (description | ||||
|      "biomaRt provides an interface to a growing collection of databases | ||||
| implementing the @url{BioMart software suite, http://www.biomart.org}.  The | ||||
| package enables retrieval of large amounts of data in a uniform way without | ||||
| the need to know the underlying database schemas or write complex SQL queries. | ||||
| Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, | ||||
| Wormbase and dbSNP mapped to Ensembl.  These major databases give biomaRt | ||||
| users direct access to a diverse set of data and enable a wide range of | ||||
| powerful online queries from gene annotation to database mining.") | ||||
|     (license license:artistic2.0))) | ||||
| 
 | ||||
| (define-public r-category | ||||
|   (package | ||||
|     (name "r-category") | ||||
|  |  | |||
|  | @ -7691,44 +7691,6 @@ including VCF header and contents in RDF and JSON.") | |||
|     (home-page "https://github.com/vcflib/bio-vcf") | ||||
|     (license license:expat))) | ||||
| 
 | ||||
| (define-public r-biomart | ||||
|   (package | ||||
|     (name "r-biomart") | ||||
|     (version "2.46.3") | ||||
|     (source (origin | ||||
|               (method url-fetch) | ||||
|               (uri (bioconductor-uri "biomaRt" version)) | ||||
|               (sha256 | ||||
|                (base32 | ||||
|                 "0gwmd0ykpv0gyh34c56g5m12lil20fvig49f3ih1jxrxf3q4wmq7")))) | ||||
|     (properties | ||||
|      `((upstream-name . "biomaRt"))) | ||||
|     (build-system r-build-system) | ||||
|     (propagated-inputs | ||||
|      `(("r-annotationdbi" ,r-annotationdbi) | ||||
|        ("r-biocfilecache" ,r-biocfilecache) | ||||
|        ("r-httr" ,r-httr) | ||||
|        ("r-openssl" ,r-openssl) | ||||
|        ("r-progress" ,r-progress) | ||||
|        ("r-rappdirs" ,r-rappdirs) | ||||
|        ("r-stringr" ,r-stringr) | ||||
|        ("r-xml" ,r-xml) | ||||
|        ("r-xml2" ,r-xml2))) | ||||
|     (native-inputs | ||||
|      `(("r-knitr" ,r-knitr))) | ||||
|     (home-page "https://bioconductor.org/packages/biomaRt") | ||||
|     (synopsis "Interface to BioMart databases") | ||||
|     (description | ||||
|      "biomaRt provides an interface to a growing collection of databases | ||||
| implementing the @url{BioMart software suite, http://www.biomart.org}.  The | ||||
| package enables retrieval of large amounts of data in a uniform way without | ||||
| the need to know the underlying database schemas or write complex SQL queries. | ||||
| Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, | ||||
| Wormbase and dbSNP mapped to Ensembl.  These major databases give biomaRt | ||||
| users direct access to a diverse set of data and enable a wide range of | ||||
| powerful online queries from gene annotation to database mining.") | ||||
|     (license license:artistic2.0))) | ||||
| 
 | ||||
| (define-public r-biocparallel | ||||
|   (package | ||||
|     (name "r-biocparallel") | ||||
|  |  | |||
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