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gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri.

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* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
This commit is contained in:
Ricardo Wurmus 2019-12-04 09:34:13 +01:00
parent 1afdf41b49
commit c271d99025
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1 changed files with 2 additions and 9 deletions
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gnu/packages/bioconductor.scm
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@ -573,21 +573,14 @@ database is exposed as a @code{TxDb} object.")
(version "3.4.7") (version "3.4.7")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is (uri (bioconductor-uri "TxDb.Mmusculus.UCSC.mm10.knownGene"
;; located under "data/annotation/" instead of "bioc/". version 'annotation))
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"TxDb.Mmusculus.UCSC.mm10.knownGene_"
version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"04impkl8zh1gpwwrpbf19jqznsjrq2306yyhm6cmx6hr1401bd6b")))) "04impkl8zh1gpwwrpbf19jqznsjrq2306yyhm6cmx6hr1401bd6b"))))
(properties (properties
`((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene"))) `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene")))
(build-system r-build-system) (build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs (propagated-inputs
`(("r-bsgenome" ,r-bsgenome) `(("r-bsgenome" ,r-bsgenome)
("r-genomicfeatures" ,r-genomicfeatures) ("r-genomicfeatures" ,r-genomicfeatures)