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gnu: Add r-bioconcotk.

* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
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Ricardo Wurmus 2019-12-18 15:25:17 +01:00
parent 0678479391
commit c2b36a0441
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@ -7204,3 +7204,46 @@ Bioconductor user experience by extending concepts from
classes for individual assays, and allowing subsetting by genomic ranges or classes for individual assays, and allowing subsetting by genomic ranges or
rownames.") rownames.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-bioconcotk
(package
(name "r-bioconcotk")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BiocOncoTK" version))
(sha256
(base32
"0rnah6c01a33yb9663jim9iclan61rpcwprb56mykgn1pf5hywbj"))))
(properties `((upstream-name . "BiocOncoTK")))
(build-system r-build-system)
(propagated-inputs
`(("r-bigrquery" ,r-bigrquery)
("r-car" ,r-car)
("r-complexheatmap" ,r-complexheatmap)
("r-curatedtcgadata" ,r-curatedtcgadata)
("r-dbi" ,r-dbi)
("r-dplyr" ,r-dplyr)
("r-dt" ,r-dt)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggpubr" ,r-ggpubr)
("r-graph" ,r-graph)
("r-httr" ,r-httr)
("r-iranges" ,r-iranges)
("r-magrittr" ,r-magrittr)
("r-plyr" ,r-plyr)
("r-rgraphviz" ,r-rgraphviz)
("r-rjson" ,r-rjson)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-shiny" ,r-shiny)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://bioconductor.org/packages/BiocOncoTK")
(synopsis "Bioconductor components for general cancer genomics")
(description
"The purpose of this package is to provide a central interface to various
tools for genome-scale analysis of cancer studies.")
(license license:artistic2.0)))