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gnu: r-rhdf5filters: Update to 1.12.0.

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* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.0.
[arguments]: Add phase 'use-system-libraries.
[inputs]: Add bzip2, c-blosc, and zstd:lib.
[native-inputs]: Add r-biocstyle and r-rmarkdown.
This commit is contained in:
Ricardo Wurmus 2023-04-28 17:59:59 +02:00
parent 4e9e8ed194
commit c2f9c0af28
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1 changed files with 24 additions and 4 deletions
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gnu/packages/bioconductor.scm
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@ -8483,22 +8483,42 @@ the available RAM.")
(define-public r-rhdf5filters (define-public r-rhdf5filters
(package (package
(name "r-rhdf5filters") (name "r-rhdf5filters")
(version "1.10.1") (version "1.12.0")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "rhdf5filters" version)) (uri (bioconductor-uri "rhdf5filters" version))
(sha256 (sha256
(base32 (base32
"14rkr0fisy7qrvjikpnwxwag79205hdxy6nkpwz501li4fr1rbnp")))) "1spiva2l9mg34kbgb2kgif8ckv3vyrg1gmzx26ibzr7klyjqvrqk"))))
(properties `((upstream-name . "rhdf5filters"))) (properties `((upstream-name . "rhdf5filters")))
(build-system r-build-system) (build-system r-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'use-system-libraries
(lambda _
(substitute* "src/blosc/Makefile.in"
(("libblosc.a: blosc") "libwhatever.a:")
(("libblosc.a")
(string-append #$(this-package-input "c-blosc")
"/lib/libblosc.so"))
(("../zstd/libzstd.a") "-lzstd"))
(substitute* "src/bzip2/Makefile"
(("libH5Zbz2.so: bzip2-1.0.8/libbz2.a") "libH5Zbz2.so:")
(("./bzip2-1.0.8/libbz2.a") "-lbz2"))
(substitute* "src/zstd/Makefile"
(("libH5Zzstd.so: libzstd.a") "libH5Zzstd.so:")
(("libzstd.a") "-lzstd"))
(substitute* "src/vbz/Makefile"
(("../zstd/libzstd.a") "-lzstd")))))))
(propagated-inputs (propagated-inputs
(list r-rhdf5lib)) (list r-rhdf5lib))
(inputs (inputs
(list zlib)) (list bzip2 c-blosc zlib (list zstd "lib")))
(native-inputs (native-inputs
(list r-knitr)) (list r-biocstyle r-knitr r-rmarkdown))
(home-page "https://github.com/grimbough/rhdf5filters") (home-page "https://github.com/grimbough/rhdf5filters")
(synopsis "HDF5 compression filters") (synopsis "HDF5 compression filters")
(description (description