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gnu: Add libgff.

* gnu/packages/bioinformatics.scm (libgff): New variable.
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Ricardo Wurmus 2018-01-17 22:41:05 +01:00
parent b0b7150b6c
commit c3b2ab9d3b
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1 changed files with 24 additions and 1 deletions

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@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
@ -11109,3 +11109,26 @@ for alignment. Pseudoalignment of reads preserves the key information needed
for quantification, and kallisto is therefore not only fast, but also as
accurate as existing quantification tools.")
(license license:bsd-2)))
(define-public libgff
(package
(name "libgff")
(version "1.0")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/Kingsford-Group/"
"libgff/archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0vc4nxyhlm6g9vvmx5l4lfs5pnvixsv1hiiy4kddf2y3p6jna8ls"))))
(build-system cmake-build-system)
(arguments `(#:tests? #f)) ; no tests included
(home-page "https://github.com/Kingsford-Group/libgff")
(synopsis "Parser library for reading/writing GFF files")
(description "This is a simple \"libraryfication\" of the GFF/GTF parsing
code that is used in the Cufflinks codebase. The goal of this library is to
provide this functionality without the necessity of drawing in a heavy-weight
dependency like SeqAn.")
(license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt"))))