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gnu: Add libgff.

* gnu/packages/bioinformatics.scm (libgff): New variable.
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Ricardo Wurmus 2018-01-17 22:41:05 +01:00
parent b0b7150b6c
commit c3b2ab9d3b
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1 changed files with 24 additions and 1 deletions

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@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU ;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2015, 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
@ -11109,3 +11109,26 @@ for alignment. Pseudoalignment of reads preserves the key information needed
for quantification, and kallisto is therefore not only fast, but also as for quantification, and kallisto is therefore not only fast, but also as
accurate as existing quantification tools.") accurate as existing quantification tools.")
(license license:bsd-2))) (license license:bsd-2)))
(define-public libgff
(package
(name "libgff")
(version "1.0")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/Kingsford-Group/"
"libgff/archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0vc4nxyhlm6g9vvmx5l4lfs5pnvixsv1hiiy4kddf2y3p6jna8ls"))))
(build-system cmake-build-system)
(arguments `(#:tests? #f)) ; no tests included
(home-page "https://github.com/Kingsford-Group/libgff")
(synopsis "Parser library for reading/writing GFF files")
(description "This is a simple \"libraryfication\" of the GFF/GTF parsing
code that is used in the Cufflinks codebase. The goal of this library is to
provide this functionality without the necessity of drawing in a heavy-weight
dependency like SeqAn.")
(license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt"))))