gnu: Add r-hitc.
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
This commit is contained in:
		
							parent
							
								
									30eb4e37c8
								
							
						
					
					
						commit
						c49102ecca
					
				
					 1 changed files with 29 additions and 0 deletions
				
			
		| 
						 | 
				
			
			@ -10166,6 +10166,35 @@ intra-chromosomal contact maps produced by genome-wide genome architecture
 | 
			
		|||
assays such as Hi-C.")
 | 
			
		||||
    (license license:gpl2+)))
 | 
			
		||||
 | 
			
		||||
(define-public r-hitc
 | 
			
		||||
  (package
 | 
			
		||||
    (name "r-hitc")
 | 
			
		||||
    (version "1.22.0")
 | 
			
		||||
    (source (origin
 | 
			
		||||
              (method url-fetch)
 | 
			
		||||
              (uri (bioconductor-uri "HiTC" version))
 | 
			
		||||
              (sha256
 | 
			
		||||
               (base32
 | 
			
		||||
                "0288xa1jy6nzvz2ha07csmp6dirjw5r7p9vy69q2wsbyzr02ymkp"))))
 | 
			
		||||
    (properties `((upstream-name . "HiTC")))
 | 
			
		||||
    (build-system r-build-system)
 | 
			
		||||
    (propagated-inputs
 | 
			
		||||
     `(("r-biostrings" ,r-biostrings)
 | 
			
		||||
       ("r-genomeinfodb" ,r-genomeinfodb)
 | 
			
		||||
       ("r-genomicranges" ,r-genomicranges)
 | 
			
		||||
       ("r-iranges" ,r-iranges)
 | 
			
		||||
       ("r-matrix" ,r-matrix)
 | 
			
		||||
       ("r-rcolorbrewer" ,r-rcolorbrewer)
 | 
			
		||||
       ("r-rtracklayer" ,r-rtracklayer)))
 | 
			
		||||
    (home-page "https://bioconductor.org/packages/HiTC")
 | 
			
		||||
    (synopsis "High throughput chromosome conformation capture analysis")
 | 
			
		||||
    (description
 | 
			
		||||
     "The HiTC package was developed to explore high-throughput \"C\" data
 | 
			
		||||
such as 5C or Hi-C.  Dedicated R classes as well as standard methods for
 | 
			
		||||
quality controls, normalization, visualization, and further analysis are also
 | 
			
		||||
provided.")
 | 
			
		||||
    (license license:artistic2.0)))
 | 
			
		||||
 | 
			
		||||
(define-public r-qvalue
 | 
			
		||||
  (package
 | 
			
		||||
    (name "r-qvalue")
 | 
			
		||||
| 
						 | 
				
			
			
 | 
			
		|||
		Reference in a new issue