gnu: Add BSgenome.
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.master
parent
fbf6045e33
commit
c63cef6699
|
@ -3836,6 +3836,36 @@ dependencies between GO terms can be implemented and applied.")
|
|||
;; Any version of the LGPL applies.
|
||||
(license license:lgpl2.1+)))
|
||||
|
||||
(define-public r-bsgenome
|
||||
(package
|
||||
(name "r-bsgenome")
|
||||
(version "1.38.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "BSgenome" version))
|
||||
(sha256
|
||||
(base32
|
||||
"130w0m6q8kkca7gyz1aqj5jjhalwvwi6rk2yvbjrnj4gpnncyrd2"))))
|
||||
(properties
|
||||
`((upstream-name . "BSgenome")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-biocgenerics" ,r-biocgenerics)
|
||||
("r-biostrings" ,r-biostrings)
|
||||
("r-genomeinfodb" ,r-genomeinfodb)
|
||||
("r-genomicranges" ,r-genomicranges)
|
||||
("r-iranges" ,r-iranges)
|
||||
("r-rsamtools" ,r-rsamtools)
|
||||
("r-rtracklayer" ,r-rtracklayer)
|
||||
("r-s4vectors" ,r-s4vectors)
|
||||
("r-xvector" ,r-xvector)))
|
||||
(home-page "http://bioconductor.org/packages/BSgenome")
|
||||
(synopsis "Infrastructure for Biostrings-based genome data packages")
|
||||
(description
|
||||
"This package provides infrastructure shared by all Biostrings-based
|
||||
genome data packages and support for efficient SNP representation.")
|
||||
(license license:artistic2.0)))
|
||||
|
||||
(define-public r-qtl
|
||||
(package
|
||||
(name "r-qtl")
|
||||
|
|
Reference in New Issue