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gnu: Add BSgenome.

* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
master
Ricardo Wurmus 2015-12-23 17:34:07 +01:00
parent fbf6045e33
commit c63cef6699
1 changed files with 30 additions and 0 deletions

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@ -3836,6 +3836,36 @@ dependencies between GO terms can be implemented and applied.")
;; Any version of the LGPL applies.
(license license:lgpl2.1+)))
(define-public r-bsgenome
(package
(name "r-bsgenome")
(version "1.38.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BSgenome" version))
(sha256
(base32
"130w0m6q8kkca7gyz1aqj5jjhalwvwi6rk2yvbjrnj4gpnncyrd2"))))
(properties
`((upstream-name . "BSgenome")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
(home-page "http://bioconductor.org/packages/BSgenome")
(synopsis "Infrastructure for Biostrings-based genome data packages")
(description
"This package provides infrastructure shared by all Biostrings-based
genome data packages and support for efficient SNP representation.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")