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@ -8089,3 +8089,31 @@ metrics, such as the elbow method and Horn's parallel analysis, which has
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relevance for data reduction in single-cell RNA-seq (scRNA-seq) and high
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relevance for data reduction in single-cell RNA-seq (scRNA-seq) and high
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dimensional mass cytometry data.")
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dimensional mass cytometry data.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public r-rgreat
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(package
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(name "r-rgreat")
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(version "1.20.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "rGREAT" version))
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(sha256
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(base32
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"0n8dw9ibb2klsczcxvvinpi9l53w8cs436i0c8w2jmramayl593v"))))
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(properties `((upstream-name . "rGREAT")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-genomicranges" ,r-genomicranges)
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("r-getoptlong" ,r-getoptlong)
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("r-iranges" ,r-iranges)
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("r-rcurl" ,r-rcurl)
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("r-rjson" ,r-rjson)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/jokergoo/rGREAT")
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(synopsis "Client for GREAT analysis")
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(description
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"This package makes GREAT (Genomic Regions Enrichment of Annotations
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Tool) analysis automatic by constructing a HTTP POST request according to
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user's input and automatically retrieving results from GREAT web server.")
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(license license:expat)))
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