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gnu: Add r-stringdb.

* gnu/packages/bioconductor.scm (r-stringdb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
master
Mădălin Ionel Patrașcu 2021-10-30 17:55:05 +02:00 committed by Ricardo Wurmus
parent fefdea2a1a
commit c96d8ce720
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@ -4386,6 +4386,39 @@ events and allows for the incorporation of prior knowledge through supervised
graph construction.") graph construction.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-stringdb
(package
(name "r-stringdb")
(version "2.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "STRINGdb" version))
(sha256
(base32 "1hvb73anhbf1g82nn5m11s783z6ihvlavf7p30w29qggxggnl6lm"))))
(properties `((upstream-name . "STRINGdb")))
(build-system r-build-system)
(propagated-inputs
`(("r-gplots" ,r-gplots)
("r-hash" ,r-hash)
("r-igraph" ,r-igraph)
("r-plotrix" ,r-plotrix)
("r-plyr" ,r-plyr)
("r-png" ,r-png)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rcurl" ,r-rcurl)
("r-sqldf" ,r-sqldf)))
(home-page "https://git.bioconductor.org/packages/STRINGdb")
(synopsis "Search tool for the retrieval of interacting proteins database")
(description
"The @code{STRINGdb} package provides an R interface to the STRING
protein-protein interactions database. @url{https://www.string-db.org,
STRING} is a database of known and predicted protein-protein interactions.
The interactions include direct (physical) and indirect (functional)
associations. Each interaction is associated with a combined confidence score
that integrates the various evidences.")
(license license:gpl2)))
(define-public r-structuralvariantannotation (define-public r-structuralvariantannotation
(package (package
(name "r-structuralvariantannotation") (name "r-structuralvariantannotation")