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gnu: Add r-scopeloomr.

* gnu/packages/bioinformatics.scm (r-scopeloomr): New variable.
master
Ricardo Wurmus 2022-03-09 11:35:35 +01:00
parent 191ff81556
commit ca588fdfde
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1 changed files with 29 additions and 0 deletions

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@ -13883,6 +13883,35 @@ vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots
are generated using @code{ggplot2}.")
(license license:expat)))
(define-public r-scopeloomr
(let ((commit "99726f5f7da794042036b73924b6a10d6e7b4d5d")
(revision "1"))
(package
(name "r-scopeloomr")
(version (git-version "0.13.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/aertslab/SCopeLoomR")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1ci17ms0c0hf7yfp9ckcg7a2y1s0nm19jj3cifsd55hwc0gdglmz"))))
(properties `((upstream-name . "SCopeLoomR")))
(build-system r-build-system)
(propagated-inputs
(list r-base64enc r-hdf5r r-igraph r-matrix r-plyr r-rjson r-rlist))
(home-page "https://github.com/aertslab/SCopeLoomR")
(synopsis "Build .loom files and extract data from them")
(description
"This is an R package to build generic @code{.loom} files aligning with
the default naming convention of the @code{.loom} format and to integrate
other data types e.g.: regulons (SCENIC), clusters from Seurat, trajectory
information... The package can also be used to extract data from @code{.loom}
files.")
(license license:expat))))
(define-public vbz-compression
(package
(name "vbz-compression")