gnu: Add python-snaptools.
* gnu/packages/bioinformatics.scm (python-snaptools): New variable. Change-Id: I4f4b32cbbb64472e65d2d88184173b6e1a75e8d2master
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@ -2366,6 +2366,40 @@ sequencing data and the end result are tables of UMI-unique DamID and CEL-Seq
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counts.")
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counts.")
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(license license:expat)))
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(license license:expat)))
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(define-public python-snaptools
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(package
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(name "python-snaptools")
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(version "1.4.8")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "snaptools" version))
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(sha256
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(base32
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"1s5373g5jjbshh3q39zy7dlxr7nda6ksxq9d1gw46h82c4fsmfbn"))))
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(build-system pyproject-build-system)
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(propagated-inputs
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(list python-future
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python-h5py
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python-louvain
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python-numpy
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python-pybedtools
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python-pysam))
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(home-page "https://github.com/r3fang/SnapTools")
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(synopsis "Tools for processing snap files" )
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(description
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"@code{SnapTools} can operate on snap files the following types of
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operations:
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@itemize
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@item index the reference genome before alignment;
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@item align reads to the corresponding reference genome;
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@item pre-process by convert pair-end reads into fragments, checking the
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mapping quality score, alingment and filtration;
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@item create the cell-by-bin matrix.
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@end itemize")
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(license license:asl2.0)))
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(define-public python-bioframe
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(define-public python-bioframe
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(package
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(package
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(name "python-bioframe")
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(name "python-bioframe")
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