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gnu: pigx-rnaseq: Update to 0.1.0. 

* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.1.0.
[arguments]: Remove phase 'patch-knitr.
master
Ricardo Wurmus 2022-06-01 11:07:27 +02:00
parent 0aae2f7f01
commit cd95d7ddd1
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GPG Key ID: 197A5888235FACAC
1 changed files with 2 additions and 9 deletions
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gnu/packages/bioinformatics.scm
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@ -10441,7 +10441,7 @@ once. This package provides tools to perform Drop-seq analyses.")
(define-public pigx-rnaseq (define-public pigx-rnaseq
(package (package
(name "pigx-rnaseq") (name "pigx-rnaseq")
(version "0.0.21") (version "0.1.0")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/" (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/"
@ -10449,19 +10449,12 @@ once. This package provides tools to perform Drop-seq analyses.")
"/pigx_rnaseq-" version ".tar.gz")) "/pigx_rnaseq-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"0367jn73vja94ch9fwgaiwy62rbxfzc85xz6blzbkjyzhph1r173")))) "0acdjimfb9ywba8zsv7lavv436pmcmp8ra683h11wr4s3681pqk8"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:parallel-tests? #f ; not supported `(#:parallel-tests? #f ; not supported
#:phases #:phases
(modify-phases %standard-phases (modify-phases %standard-phases
;; knitr 0.39 changes the default behavior of how graphics are
;; included.
(add-after 'unpack 'patch-knitr
(lambda _
(substitute* "scripts/runDeseqReport.R"
(("outFile <- paste0" m)
(string-append "options(knitr.graphics.rel_path = FALSE)\n" m)))))
;; "test.sh" runs the whole pipeline, which takes a long time and ;; "test.sh" runs the whole pipeline, which takes a long time and
;; might fail due to OOM. The MultiQC is also resource intensive. ;; might fail due to OOM. The MultiQC is also resource intensive.
(add-after 'unpack 'disable-resource-intensive-test (add-after 'unpack 'disable-resource-intensive-test