gnu: Add r-scseqcomm.
* gnu/packages/bioinformatics.scm (r-scseqcomm): New variable.
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@ -7910,6 +7910,56 @@ of transcriptional heterogeneity among single cells.")
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analyze genomic data resulting from various experiments.")
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analyze genomic data resulting from various experiments.")
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(license license:gpl2)))
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(license license:gpl2)))
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(define-public r-scseqcomm
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(let ((commit "01076e703999f1a5aa76419d821b50aebe2b777a")
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(revision "0"))
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(package
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(name "r-scseqcomm")
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(version (git-version "0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://gitlab.com/sysbiobig/scseqcomm")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1fw5si47d6agnz5fibmp2b1sv08pbpwv1j71w57xbav9044i032q"))
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;; Delete bundled dependency.
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(modules '((guix build utils)))
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(snippet
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'(delete-file-recursively "other_deps"))))
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(build-system r-build-system)
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(inputs
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(list r-add2ggplot
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r-chorddiag
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r-doparallel
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r-dplyr
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r-foreach
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;;r-grid ;; listed in DESCRIPTION
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r-gridextra
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r-ggplot2
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r-gtable
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r-htmlwidgets
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r-igraph
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r-matrix
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;;r-methods ;; listed in DESCRIPTION
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r-org-hs-eg-db
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r-psych
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r-rcolorbrewer
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r-rlang
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r-scico
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r-tidygraph
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r-topgo))
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(native-inputs
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(list r-knitr))
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(home-page "https://gitlab.com/sysbiobig/scseqcomm")
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(synopsis "Inter- and intra- cellular signaling from single cell RNA-seq")
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(description "This package is tools for analysing intercellular and
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intracellular signaling from single cell RNA-seq (scRNA-seq) data.")
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(license license:gpl3))))
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(define-public r-shaman
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(define-public r-shaman
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(let ((commit "d6944e8ac7bd1dbd5c6cec646eafc1d19d0ca96f")
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(let ((commit "d6944e8ac7bd1dbd5c6cec646eafc1d19d0ca96f")
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(release "2.0")
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(release "2.0")
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