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gnu: Add r-pwalign.

* gnu/packages/bioconductor.scm (r-pwalign): New variable.

Change-Id: I6a12f48c5de948292af7c6888b12e849e1f42db7
master
Ricardo Wurmus 2024-05-07 12:23:38 +02:00
parent 155ac301f7
commit cf3471cc9e
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1 changed files with 24 additions and 0 deletions

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@ -10381,6 +10381,30 @@ batch correction and normalization.")
proteomics packages.") proteomics packages.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-pwalign
(package
(name "r-pwalign")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "pwalign" version))
(sha256
(base32 "1m0j1m5jif5spd9fkpzz3z3c9s8vwiy8xvpx8rz8igxj89rwrwb7"))))
(properties `((upstream-name . "pwalign")))
(build-system r-build-system)
(propagated-inputs (list r-biocgenerics r-biostrings r-iranges r-s4vectors
r-xvector))
(home-page "https://bioconductor.org/packages/pwalign")
(synopsis "Perform pairwise sequence alignments")
(description
"The two main functions in the package are @code{pairwiseAlignment} and
@code{stringDist}. The former solves (Needleman-Wunsch) global alignment,
(Smith-Waterman) local alignment, and (ends-free) overlap alignment problems.
The latter computes the Levenshtein edit distance or pairwise alignment score
matrix for a set of strings.")
(license license:artistic2.0)))
(define-public r-rbgl (define-public r-rbgl
(package (package
(name "r-rbgl") (name "r-rbgl")