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gnu: r-bioccheck: Update to 1.28.0.

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* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.28.0.
[arguments]: Remove.
This commit is contained in:
Ricardo Wurmus 2021-06-04 16:06:22 +02:00
parent 1b0338d76b
commit d0a7dc0cb6
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GPG key ID: 197A5888235FACAC
1 changed files with 2 additions and 21 deletions
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23
gnu/packages/bioconductor.scm
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@ -11350,35 +11350,16 @@ monograph.")
(define-public r-bioccheck
(package
(name "r-bioccheck")
(version "1.26.0")
(version "1.28.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BiocCheck" version))
(sha256
(base32
"1hyncn9zqj432da95k86rm5b28nbwrvzm52jbhisifkxj1j43cib"))))
"1h0l5w33c9jpc20pynq634qmx8jbfa802d7jslmf4haljmrxm4a1"))))
(properties
`((upstream-name . "BiocCheck")))
(build-system r-build-system)
(arguments
'(#:phases
(modify-phases %standard-phases
;; This package can be used by calling BiocCheck(<package>) from
;; within R, or by running R CMD BiocCheck <package>. This phase
;; makes sure the latter works. For this to work, the BiocCheck
;; script must be somewhere on the PATH (not the R bin directory).
(add-after 'install 'install-bioccheck-subcommand
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(dest-dir (string-append out "/bin"))
(script-dir
(string-append out "/site-library/BiocCheck/script/")))
(mkdir-p dest-dir)
(symlink (string-append script-dir "/checkBadDeps.R")
(string-append dest-dir "/checkBadDeps.R"))
(symlink (string-append script-dir "/BiocCheck")
(string-append dest-dir "/BiocCheck")))
#t)))))
(propagated-inputs
`(("r-codetools" ,r-codetools)
("r-graph" ,r-graph)