gnu: rseqc: Update to 3.0.1.
* gnu/packages/bioinformatics.scm (rseqc): Update to 3.0.1. [source]: Remove snippet. [arguments]: Remove to build with Python 3. [inputs]: Replace python2-cython, python2-pysam, and python2-numpy with python-cython, python-pysam, and python-numpy, respectively; add python-bx-python and python-pybigwig. [native-inputs]: Replace python2-nose with python-nose.
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					 1 changed files with 9 additions and 19 deletions
				
			
		|  | @ -5306,7 +5306,7 @@ BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.") | |||
| (define-public rseqc | ||||
|   (package | ||||
|     (name "rseqc") | ||||
|     (version "2.6.1") | ||||
|     (version "3.0.1") | ||||
|     (source | ||||
|      (origin | ||||
|        (method url-fetch) | ||||
|  | @ -5314,28 +5314,18 @@ BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.") | |||
|         (string-append "mirror://sourceforge/rseqc/" | ||||
|                        "RSeQC-" version ".tar.gz")) | ||||
|        (sha256 | ||||
|         (base32 "15ly0254yi032qzkdplg00q144qfdsd986gh62829rl5bkxhj330")) | ||||
|        (modules '((guix build utils))) | ||||
|        (snippet | ||||
|         '(begin | ||||
|            ;; remove bundled copy of pysam | ||||
|            (delete-file-recursively "lib/pysam") | ||||
|            (substitute* "setup.py" | ||||
|              ;; remove dependency on outdated "distribute" module | ||||
|              (("^from distribute_setup import use_setuptools") "") | ||||
|              (("^use_setuptools\\(\\)") "") | ||||
|              ;; do not use bundled copy of pysam | ||||
|              (("^have_pysam = False") "have_pysam = True")) | ||||
|            #t)))) | ||||
|         (base32 | ||||
|          "0gbb9iyb7swiv5455fm5rg98r7l6qn27v564yllqjd574hncpx6m")))) | ||||
|     (build-system python-build-system) | ||||
|     (arguments `(#:python ,python-2)) | ||||
|     (inputs | ||||
|      `(("python-cython" ,python2-cython) | ||||
|        ("python-pysam" ,python2-pysam) | ||||
|        ("python-numpy" ,python2-numpy) | ||||
|      `(("python-cython" ,python-cython) | ||||
|        ("python-bx-python" ,python-bx-python) | ||||
|        ("python-pybigwig" ,python-pybigwig) | ||||
|        ("python-pysam" ,python-pysam) | ||||
|        ("python-numpy" ,python-numpy) | ||||
|        ("zlib" ,zlib))) | ||||
|     (native-inputs | ||||
|      `(("python-nose" ,python2-nose))) | ||||
|      `(("python-nose" ,python-nose))) | ||||
|     (home-page "http://rseqc.sourceforge.net/") | ||||
|     (synopsis "RNA-seq quality control package") | ||||
|     (description | ||||
|  |  | |||
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