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gnu: Add r-r3cseq.

* gnu/packages/bioconductor.scm (r-r3cseq): New variable.

Change-Id: Ib62db1415ef3988ccef88ad600192246964b4d84
Mădălin Ionel Patrașcu 2023-10-31 11:57:19 +01:00 committed by Ricardo Wurmus
parent c0895371c5
commit d24c1078d2
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1 changed files with 32 additions and 0 deletions

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@ -7747,6 +7747,38 @@ matrix to solve the memory problem.")
the Human Protein Atlas project.") the Human Protein Atlas project.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-r3cseq
(package
(name "r-r3cseq")
(version "1.46.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "r3Cseq" version))
(sha256
(base32 "1wpjsiy9qh45h3k5s79w4zhkma5h4gvyf2sa8l934mx0jl16k0q2"))))
(properties `((upstream-name . "r3Cseq")))
(build-system r-build-system)
(propagated-inputs
(list r-biostrings
r-data-table
r-genomeinfodb
r-genomicranges
r-iranges
r-qvalue
r-rcolorbrewer
r-rsamtools
r-rtracklayer
r-sqldf
r-vgam))
(home-page "http://r3cseq.genereg.net/Site/index.html")
(synopsis
"Analysis of Chromosome conformation capture and Next-generation sequencing")
(description
"This package is used for the analysis of long-range chromatin
interactions from 3C-seq assay.")
(license license:gpl3)))
(define-public r-raggedexperiment (define-public r-raggedexperiment
(package (package
(name "r-raggedexperiment") (name "r-raggedexperiment")