gnu: Add flair.
* gnu/packages/bioinformatics.scm (flair): New variable.
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@ -16456,6 +16456,55 @@ module capable of computing base-level alignments for very large sequences.")
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(home-page "https://github.com/ekg/wfmash")
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(home-page "https://github.com/ekg/wfmash")
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(license license:expat)))
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(license license:expat)))
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(define-public flair
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(package
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(name "flair")
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(version "1.6.2")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/BrooksLabUCSC/flair")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"106swb2q7l20ki58fca1hg95q5f79bgp9gjb0clr2243ycrzyxf8"))))
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(build-system python-build-system)
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(arguments
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(list
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#:tests? #false ;there are none
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#:phases
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#~(modify-phases %standard-phases
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;; TODO: implement as a feature of python-build-system (PEP-621,
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;; PEP-631, PEP-660)
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(replace 'build
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(lambda _
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(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
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;; ZIP does not support timestamps before 1980.
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(setenv "SOURCE_DATE_EPOCH" "315532800")
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(invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
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(replace 'install
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(lambda _
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(apply invoke "pip" "--no-cache-dir" "--no-input"
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"install" "--no-deps" "--prefix" #$output
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(find-files "dist" "\\.whl$")))))))
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(propagated-inputs
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(list python-mappy
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python-ncls
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python-pybedtools
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python-pysam
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python-tqdm))
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(native-inputs
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(list python-pypa-build python-setuptools))
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(home-page "https://flair.readthedocs.io/en/latest/")
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(synopsis "Full-length alternative isoform analysis of RNA")
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(description "This package implements FLAIR (Full-Length Alternative
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Isoform analysis of RNA) for the correction, isoform definition, and
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alternative splicing analysis of noisy reads. FLAIR has primarily been used
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for nanopore cDNA, native RNA, and PacBio sequencing reads.")
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(license license:bsd-3)))
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(define-public go-github-com-biogo-graph
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(define-public go-github-com-biogo-graph
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(package
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(package
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(name "go-github-com-biogo-graph")
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(name "go-github-com-biogo-graph")
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