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gnu: Add r-scrnaseq. 

* gnu/packages/bioconductor.scm (r-scrnaseq): New variable.

Change-Id: Iee25b59af0000f4d2fd7482183b43404840a336c
master
Ricardo Wurmus 2024-01-05 08:43:29 +01:00
parent 036d2fc88a
commit d2a6480e8e
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1 changed files with 33 additions and 1 deletions
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34
gnu/packages/bioconductor.scm
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@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015-2023 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015-2024 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017, 2018, 2020, 2021 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
@ -10510,6 +10510,38 @@ expression information. The package functions as a wrapper for Startrac and
powerTCR R packages.")
(license license:gpl2)))
(define-public r-scrnaseq
(package
(name "r-scrnaseq")
(version "2.16.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scRNAseq" version
'experiment))
(sha256
(base32 "0dbh3sqq7lkkdf7vls5qg7fbn6y74c7hsigb4d69pvk934ll88aw"))))
(properties `((upstream-name . "scRNAseq")))
(build-system r-build-system)
(propagated-inputs (list r-annotationdbi
r-annotationhub
r-biocgenerics
r-ensembldb
r-experimenthub
r-genomicfeatures
r-genomicranges
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/scRNAseq")
(synopsis "Collection of public single-cell RNA-seq datasets")
(description
"This package contains gene-level counts for a collection of public
@code{scRNA-seq} datasets, provided as @code{SingleCellExperiment} objects
with cell- and gene-level metadata.")
(license license:cc0)))
(define-public r-scry
(package
(name "r-scry")