From d407bdb9318aa56ed2e0ffe520fa606a84568b01 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 4 Jan 2017 16:25:20 +0100 Subject: [PATCH] gnu: Add r-copyhelper. * gnu/packages/bioinformatics.scm (r-copyhelper): New variable. --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 98d9f92e37..35269f8071 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7894,3 +7894,29 @@ common bioinformatics tools.") "This package provides tools for processing short read data from ChIPseq experiments.") (license license:artistic2.0))) + +(define-public r-copyhelper + (package + (name "r-copyhelper") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (string-append "http://bioconductor.org/packages/release/" + "data/experiment/src/contrib/CopyhelpeR_" + version ".tar.gz")) + (sha256 + (base32 + "0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq")))) + (properties `((upstream-name . "CopyhelpeR"))) + (build-system r-build-system) + (home-page "http://bioconductor.org/packages/CopyhelpeR/") + (synopsis "Helper files for CopywriteR") + (description + "This package contains the helper files that are required to run the +Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content +and mappability files for the reference genomes hg18, hg19, hg38, mm9 and +mm10. In addition, it contains a blacklist filter to remove regions that +display copy number variation. Files are stored as GRanges objects from the +GenomicRanges Bioconductor package.") + (license license:gpl2)))