me
/
guix
Archived
1
0
Fork 0
Code

gnu: bedtools-2.18: Fix build with newer toolchain. 

* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Add phase
'compatibility, fixing syntax quirks that are problematic with newer
toolchains.
[native-inputs]: Do not inherit.
[inherit]: Do not inherit.
master
Ricardo Wurmus 2021-11-03 08:14:56 +00:00
parent 3c3d7f0410
commit d54a4285ea
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 14 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

16
gnu/packages/bioinformatics.scm
View File

@ -544,14 +544,26 @@ BED, GFF/GTF, VCF.")
'(#:test-target "test"
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'compatibility
(lambda _
(substitute* "src/utils/fileType/FileRecordTypeChecker.h"
(("static const float PERCENTAGE")
"static constexpr float PERCENTAGE"))
(substitute* "src/utils/general/DualQueue.h"
(("template <class T, template<class T> class CompareFunc>")
"template <class T, template<class U> class CompareFunc>"))))
(delete 'configure)
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
(for-each (lambda (file)
(install-file file bin))
(find-files "bin" ".*")))
#t)))))))
(find-files "bin" ".*"))))))))
(native-inputs
`(("python" ,python-wrapper)))
(inputs
`(("samtools" ,samtools)
("zlib" ,zlib)))))
(define-public pbbam
(package