gnu: r-s4vectors: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here... * gnu/packages/bioconductor.scm (r-s4vectors): ...to here.
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@ -1,6 +1,7 @@
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;;; GNU Guix --- Functional package management for GNU
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;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
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;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
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@ -9154,6 +9155,33 @@ generated.")
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routines.")
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routines.")
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(license license:lgpl2.0+)))
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(license license:lgpl2.0+)))
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(define-public r-s4vectors
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(package
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(name "r-s4vectors")
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(version "0.28.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "S4Vectors" version))
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(sha256
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(base32
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"0fhf4lsfxrim7glazh6ng46ykzaly5ggwpg170vcz4cc24prv0rh"))))
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(properties
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`((upstream-name . "S4Vectors")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)))
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(home-page "https://bioconductor.org/packages/S4Vectors")
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(synopsis "S4 implementation of vectors and lists")
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(description
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"The S4Vectors package defines the @code{Vector} and @code{List} virtual
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classes and a set of generic functions that extend the semantic of ordinary
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vectors and lists in R. Package developers can easily implement vector-like
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or list-like objects as concrete subclasses of @code{Vector} or @code{List}.
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In addition, a few low-level concrete subclasses of general interest (e.g.
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@code{DataFrame}, @code{Rle}, and @code{Hits}) are implemented in the
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S4Vectors package itself.")
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(license license:artistic2.0)))
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;; This is a CRAN package, but it depends on preprocessorcore, which is a
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;; This is a CRAN package, but it depends on preprocessorcore, which is a
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;; Bioconductor package.
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;; Bioconductor package.
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(define-public r-wgcna
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(define-public r-wgcna
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@ -7691,33 +7691,6 @@ including VCF header and contents in RDF and JSON.")
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(home-page "https://github.com/vcflib/bio-vcf")
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(home-page "https://github.com/vcflib/bio-vcf")
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(license license:expat)))
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(license license:expat)))
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(define-public r-s4vectors
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(package
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(name "r-s4vectors")
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(version "0.28.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "S4Vectors" version))
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(sha256
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(base32
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"0fhf4lsfxrim7glazh6ng46ykzaly5ggwpg170vcz4cc24prv0rh"))))
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(properties
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`((upstream-name . "S4Vectors")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)))
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(home-page "https://bioconductor.org/packages/S4Vectors")
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(synopsis "S4 implementation of vectors and lists")
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(description
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"The S4Vectors package defines the @code{Vector} and @code{List} virtual
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classes and a set of generic functions that extend the semantic of ordinary
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vectors and lists in R. Package developers can easily implement vector-like
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or list-like objects as concrete subclasses of @code{Vector} or @code{List}.
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In addition, a few low-level concrete subclasses of general interest (e.g.
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@code{DataFrame}, @code{Rle}, and @code{Hits}) are implemented in the
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S4Vectors package itself.")
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(license license:artistic2.0)))
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(define-public r-iranges
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(define-public r-iranges
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(package
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(package
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(name "r-iranges")
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(name "r-iranges")
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