gnu: Add r-cytobackbone.
* gnu/packages/bioinformatics.scm (r-cytobackbone): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -11813,6 +11813,47 @@ distributions. Homotypic doublet proportion estimation is achieved by finding
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the sum of squared cell annotation frequencies.")
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(license license:cc0))))
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;; There have been no releases.
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(define-public r-cytobackbone
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(let ((commit "4c1a0a35cc5ae1f8f516127cec92351d96fe26e7")
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(revision "1"))
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(package
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(name "r-cytobackbone")
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(version (git-version "1.0.0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/tchitchek-lab/CytoBackBone")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0ahiad14zcgdk42xzw5xryic2ibn2l8lkrcdvl2b5sz2js028yb3"))))
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(properties `((upstream-name . "CytoBackBone")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-flowcore
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r-flowutils
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r-fnn
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r-ggplot2
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r-preprocesscore))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/tchitchek-lab/CytoBackBone")
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(synopsis "Merge phenotype information from different cytometric profiles")
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(description
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"This package implements an algorithm which increases the number of
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simultaneously measurable markers and in this way helps with study of the
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immune responses. Thus, the present algorithm, named @code{CytoBackBone},
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allows combining phenotypic information of cells from different cytometric
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profiles obtained from different cytometry panels. This computational
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approach is based on the principle that each cell has its own phenotypic and
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functional characteristics that can be used as an identification card.
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@code{CytoBackBone} uses a set of predefined markers, that we call the
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backbone, to define this identification card. The phenotypic information of
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cells with similar identification cards in the different cytometric profiles
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is then merged.")
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(license license:gpl2))))
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(define-public gffread
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;; We cannot use the tagged release because it is not in sync with gclib.
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;; See https://github.com/gpertea/gffread/issues/26
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