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gnu: r-genomationdata: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-genomationdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomationdata): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'experiment.
master
zimoun 2021-05-21 22:25:45 +02:00 committed by Ricardo Wurmus
parent f8fe5497c7
commit d7fa9c1ffd
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GPG Key ID: 197A5888235FACAC
2 changed files with 26 additions and 28 deletions

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@ -1170,6 +1170,32 @@ genomes and gene ID formats, largely based on the UCSC table browser.")
and visualize the results.")
(license license:gpl3)))
(define-public r-genomationdata
(package
(name "r-genomationdata")
(version "1.22.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "genomationData" version 'experiment))
(sha256
(base32
"0igjsvfnws3498j65ifniw0kbxfqpfr59rcjddqvq4zsj453fx1g"))))
(properties
`((upstream-name . "genomationData")))
(build-system r-build-system)
;; As this package provides little more than large data files, it doesn't
;; make sense to build substitutes.
(arguments `(#:substitutable? #f))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Experimental data for use with the genomation package")
(description
"This package contains experimental genetic data for use with the
genomation package. Included are Chip Seq, Methylation and Cage data,
downloaded from Encode.")
(license license:gpl3+)))
(define-public r-pasilla
(package
(name "r-pasilla")

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@ -8023,34 +8023,6 @@ used to obtain robust estimates of the predominant fragment length or
characteristic tag shift values in these assays.")
(license license:bsd-3)))
(define-public r-genomationdata
(package
(name "r-genomationdata")
(version "1.22.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://bioconductor.org/packages/"
"release/data/experiment/src/contrib/"
"genomationData_" version ".tar.gz"))
(sha256
(base32
"0igjsvfnws3498j65ifniw0kbxfqpfr59rcjddqvq4zsj453fx1g"))))
(build-system r-build-system)
;; As this package provides little more than large data files, it doesn't
;; make sense to build substitutes.
(arguments `(#:substitutable? #f))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Experimental data for use with the genomation package")
(description
"This package contains experimental genetic data for use with the
genomation package. Included are Chip Seq, Methylation and Cage data,
downloaded from Encode.")
(license license:gpl3+)))
(define-public r-seqlogo
(package
(name "r-seqlogo")