gnu: Add r-variancepartition.
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
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		|  | @ -6006,3 +6006,44 @@ same genome coordinate system.") | ||||||
|      "This package is designed to conduct transcriptome analysis for tiling |      "This package is designed to conduct transcriptome analysis for tiling | ||||||
| arrays based on fast wavelet-based functional models.") | arrays based on fast wavelet-based functional models.") | ||||||
|     (license license:gpl2+))) |     (license license:gpl2+))) | ||||||
|  | 
 | ||||||
|  | (define-public r-variancepartition | ||||||
|  |   (package | ||||||
|  |     (name "r-variancepartition") | ||||||
|  |     (version "1.14.0") | ||||||
|  |     (source | ||||||
|  |      (origin | ||||||
|  |        (method url-fetch) | ||||||
|  |        (uri (bioconductor-uri "variancePartition" version)) | ||||||
|  |        (sha256 | ||||||
|  |         (base32 | ||||||
|  |          "1ycapwb2mq57xibrzzjz9zwxqz4nwz9f3n5gskhlr5vcs7irkjd6")))) | ||||||
|  |     (properties | ||||||
|  |      `((upstream-name . "variancePartition"))) | ||||||
|  |     (build-system r-build-system) | ||||||
|  |     (propagated-inputs | ||||||
|  |      `(("r-biobase" ,r-biobase) | ||||||
|  |        ("r-colorramps" ,r-colorramps) | ||||||
|  |        ("r-doparallel" ,r-doparallel) | ||||||
|  |        ("r-foreach" ,r-foreach) | ||||||
|  |        ("r-ggplot2" ,r-ggplot2) | ||||||
|  |        ("r-gplots" ,r-gplots) | ||||||
|  |        ("r-iterators" ,r-iterators) | ||||||
|  |        ("r-limma" ,r-limma) | ||||||
|  |        ("r-lme4" ,r-lme4) | ||||||
|  |        ("r-lmertest" ,r-lmertest) | ||||||
|  |        ("r-mass" ,r-mass) | ||||||
|  |        ("r-pbkrtest" ,r-pbkrtest) | ||||||
|  |        ("r-progress" ,r-progress) | ||||||
|  |        ("r-reshape2" ,r-reshape2) | ||||||
|  |        ("r-scales" ,r-scales))) | ||||||
|  |     (home-page "https://bioconductor.org/packages/variancePartition/") | ||||||
|  |     (synopsis "Analyze variation in gene expression experiments") | ||||||
|  |     (description | ||||||
|  |      "This is a package providing tools to quantify and interpret multiple | ||||||
|  | sources of biological and technical variation in gene expression experiments. | ||||||
|  | It uses a linear mixed model to quantify variation in gene expression | ||||||
|  | attributable to individual, tissue, time point, or technical variables.  The | ||||||
|  | package includes dream differential expression analysis for repeated | ||||||
|  | measures.") | ||||||
|  |     (license license:gpl2+))) | ||||||
|  |  | ||||||
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