gnu: Add python-cellbender.
* gnu/packages/bioinformatics.scm (python-cellbender): New variable.master
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@ -806,6 +806,44 @@ input/output delimiter. When the new functionality is not used, bioawk is
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intended to behave exactly the same as the original BWK awk.")
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intended to behave exactly the same as the original BWK awk.")
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(license license:x11)))
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(license license:x11)))
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(define-public python-cellbender
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(package
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(name "python-cellbender")
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(version "0.2.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/broadinstitute/CellBender")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1zav2q8nnss80i25y06fccagkvrqsy7lpylsl4dxv4qkj8p4fnv3"))))
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(build-system python-build-system)
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(arguments
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(list #:tests? #false)) ;there are none
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(propagated-inputs
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(list python-anndata
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python-matplotlib
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python-numpy
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python-pandas
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python-pyro-ppl
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python-scikit-learn
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python-scipy
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python-sphinx
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python-sphinx-argparse
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python-sphinx-autodoc-typehints
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python-sphinx-rtd-theme
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python-sphinxcontrib-programoutput
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python-tables))
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(home-page "https://cellbender.rtfd.io/")
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(synopsis "Eliminate technical artifacts from single-cell RNA-seq data")
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(description
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"CellBender is a software package for eliminating technical artifacts
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from high-throughput single-cell RNA sequencing (scRNA-seq) data.")
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(license license:bsd-3)))
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(define-public python-htsget
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(define-public python-htsget
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(package
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(package
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(name "python-htsget")
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(name "python-htsget")
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