me
/
guix
Archived
1
0
Fork 0

gnu: Add python-cellbender.

* gnu/packages/bioinformatics.scm (python-cellbender): New variable.
master
Ricardo Wurmus 2022-07-09 10:37:22 +02:00
parent 6416e77280
commit d84bedd830
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 38 additions and 0 deletions

View File

@ -806,6 +806,44 @@ input/output delimiter. When the new functionality is not used, bioawk is
intended to behave exactly the same as the original BWK awk.") intended to behave exactly the same as the original BWK awk.")
(license license:x11))) (license license:x11)))
(define-public python-cellbender
(package
(name "python-cellbender")
(version "0.2.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/broadinstitute/CellBender")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"1zav2q8nnss80i25y06fccagkvrqsy7lpylsl4dxv4qkj8p4fnv3"))))
(build-system python-build-system)
(arguments
(list #:tests? #false)) ;there are none
(propagated-inputs
(list python-anndata
python-matplotlib
python-numpy
python-pandas
python-pyro-ppl
python-scikit-learn
python-scipy
python-sphinx
python-sphinx-argparse
python-sphinx-autodoc-typehints
python-sphinx-rtd-theme
python-sphinxcontrib-programoutput
python-tables))
(home-page "https://cellbender.rtfd.io/")
(synopsis "Eliminate technical artifacts from single-cell RNA-seq data")
(description
"CellBender is a software package for eliminating technical artifacts
from high-throughput single-cell RNA sequencing (scRNA-seq) data.")
(license license:bsd-3)))
(define-public python-htsget (define-public python-htsget
(package (package
(name "python-htsget") (name "python-htsget")