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gnu: r-delayedarray: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here...
* gnu/packages/bioconductor.scm (r-delayedarray): ...to here.
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zimoun 2021-03-15 19:09:04 +01:00 • committed by Ricardo Wurmus
parent adf45daae9
commit d99a18252c
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2 changed files with 33 additions and 33 deletions
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33
gnu/packages/bioconductor.scm
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@ -1212,6 +1212,39 @@ data. In addition, provides numerous plotting functions for commonly
used visualizations.")
(license license:artistic2.0)))
(define-public r-delayedarray
(package
(name "r-delayedarray")
(version "0.16.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "DelayedArray" version))
(sha256
(base32
"09lpj951v1afxkrnjvnhzp4qgklq23ykdwlny7k1lyfcdy9q6wm0"))))
(properties
`((upstream-name . "DelayedArray")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-s4vectors" ,r-s4vectors)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-matrixgenerics" ,r-matrixgenerics)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/DelayedArray")
(synopsis "Delayed operations on array-like objects")
(description
"Wrapping an array-like object (typically an on-disk object) in a
@code{DelayedArray} object allows one to perform common array operations on it
without loading the object in memory. In order to reduce memory usage and
optimize performance, operations on the object are either delayed or executed
using a block processing mechanism. Note that this also works on in-memory
array-like objects like @code{DataFrame} objects (typically with Rle columns),
@code{Matrix} objects, and ordinary arrays and data frames.")
(license license:artistic2.0)))
(define-public r-bluster
(package
(name "r-bluster")

33
gnu/packages/bioinformatics.scm
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@ -7691,39 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-delayedarray
(package
(name "r-delayedarray")
(version "0.16.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "DelayedArray" version))
(sha256
(base32
"09lpj951v1afxkrnjvnhzp4qgklq23ykdwlny7k1lyfcdy9q6wm0"))))
(properties
`((upstream-name . "DelayedArray")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-s4vectors" ,r-s4vectors)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-matrixgenerics" ,r-matrixgenerics)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/DelayedArray")
(synopsis "Delayed operations on array-like objects")
(description
"Wrapping an array-like object (typically an on-disk object) in a
@code{DelayedArray} object allows one to perform common array operations on it
without loading the object in memory. In order to reduce memory usage and
optimize performance, operations on the object are either delayed or executed
using a block processing mechanism. Note that this also works on in-memory
array-like objects like @code{DataFrame} objects (typically with Rle columns),
@code{Matrix} objects, and ordinary arrays and data frames.")
(license license:artistic2.0)))
(define-public r-summarizedexperiment
(package
(name "r-summarizedexperiment")