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gnu: r-deseq2: Update to 1.40.0.

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* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.0.
[propagated-inputs]: Remove r-geneplotter.
[native-inputs]: Add r-rmarkdown.
This commit is contained in:
Ricardo Wurmus 2023-04-28 17:59:52 +02:00
parent 176c45cb21
commit dc78185fc7
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GPG key ID: 197A5888235FACAC
1 changed files with 3 additions and 4 deletions
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gnu/packages/bioconductor.scm
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@ -6329,21 +6329,20 @@ distribution.")
(define-public r-deseq2 (define-public r-deseq2
(package (package
(name "r-deseq2") (name "r-deseq2")
(version "1.38.3") (version "1.40.0")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "DESeq2" version)) (uri (bioconductor-uri "DESeq2" version))
(sha256 (sha256
(base32 (base32
"0kryg9jb6zl4zj1wx09rmljqlhr5vdbcmdnri4q91jpggsaj9nxm")))) "12hmfj5zqs0i8qbijq5r0vlb7v95hpn1b938nkivd2kc63l25m09"))))
(properties `((upstream-name . "DESeq2"))) (properties `((upstream-name . "DESeq2")))
(build-system r-build-system) (build-system r-build-system)
(propagated-inputs (propagated-inputs
(list r-biobase (list r-biobase
r-biocgenerics r-biocgenerics
r-biocparallel r-biocparallel
r-geneplotter
r-genomicranges r-genomicranges
r-ggplot2 r-ggplot2
r-iranges r-iranges
@ -6354,7 +6353,7 @@ distribution.")
r-s4vectors r-s4vectors
r-summarizedexperiment)) r-summarizedexperiment))
(native-inputs (native-inputs
(list r-knitr)) (list r-knitr r-rmarkdown))
(home-page "https://bioconductor.org/packages/DESeq2") (home-page "https://bioconductor.org/packages/DESeq2")
(synopsis "Differential gene expression analysis") (synopsis "Differential gene expression analysis")
(description (description