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gnu: Add r-wppi.

* gnu/packages/bioconductor.scm (r-wppi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
master
Mădălin Ionel Patrașcu 2022-04-11 16:29:16 +02:00 committed by Ricardo Wurmus
parent 55be5fc400
commit dd9d26bce6
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@ -9315,6 +9315,47 @@ imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. It preprocesses
data for high-throughput, untargeted analyte profiling.")
(license license:gpl2+)))
(define-public r-wppi
(package
(name "r-wppi")
(version "1.2.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "wppi" version))
(sha256
(base32
"1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23"))))
(properties `((upstream-name . "wppi")))
(build-system r-build-system)
;; This is necessary because omnipathr attempts to write a configuration
;; file to HOME.
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'set-HOME
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs (list r-dplyr
r-igraph
r-logger
r-magrittr
r-matrix
r-omnipathr
r-progress
r-purrr
r-rcurl
r-rlang
r-tibble
r-tidyr))
(native-inputs (list r-knitr))
(home-page "https://github.com/AnaGalhoz37/wppi")
(synopsis "Weighting protein-protein interactions")
(description
"This package predicts functional relevance of protein-protein
interactions based on functional annotations such as Human Protein Ontology
and Gene Ontology, and prioritizes genes based on network topology, functional
scores and a path search algorithm.")
(license license:expat)))
(define-public r-wrench
(package
(name "r-wrench")