gnu: Add r-doubletcollection.
* gnu/packages/bioinformatics.scm (r-doubletcollection): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -23,7 +23,7 @@
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;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
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;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
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;;; Copyright © 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
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;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
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;;; Copyright © 2022 Navid Afkhami <navid.afkhami@mdc-berlin.de>
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;;; Copyright © 2022, 2023 Navid Afkhami <navid.afkhami@mdc-berlin.de>
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;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
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;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
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;;;
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;;;
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;;; This file is part of GNU Guix.
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;;; This file is part of GNU Guix.
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@ -7986,6 +7986,47 @@ tasks.")
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Pore-C concatemers.")
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Pore-C concatemers.")
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(license license:gpl3))))
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(license license:gpl3))))
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(define-public r-doubletcollection
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(let ((commit "c0d62f1853942ee6a087eaf7b000d9e4261e2dfd")
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(revision "1"))
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(package
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(name "r-doubletcollection")
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(version (git-version "1.1.0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/xnnba1984/DoubletCollection")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"02cvibyc2nwc4037ramm5cskjwyrb9ib9hkrfhmvhbslkn5ixz1v"))))
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(properties `((upstream-name . "DoubletCollection")))
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(build-system r-build-system)
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(propagated-inputs (list r-biocgenerics
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r-doubletfinder
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r-gam
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r-ggplot2
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r-ggthemes
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r-mast
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r-mclust
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r-prroc
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r-reticulate
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r-scales
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r-scdblfinder
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r-scds
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r-seurat
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r-singlecellexperiment
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r-slingshot
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r-summarizedexperiment))
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(home-page "https://github.com/xnnba1984/DoubletCollection")
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(synopsis "Tool for finding doublets in scRNA-seq data")
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(description
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"This is an R package that integrates the installation of
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doublet-detection methods. In addition, this tool is used for execution and
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benchmark of those eight mentioned methods.")
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(license license:gpl3+))))
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(define-public r-pando
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(define-public r-pando
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(package
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(package
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(name "r-pando")
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(name "r-pando")
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