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gnu: Add r-doubletcollection.

* gnu/packages/bioinformatics.scm (r-doubletcollection): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Navid Afkhami 2023-01-20 09:57:59 +01:00 committed by Ricardo Wurmus
parent 072f605c12
commit ddfe68ebbe
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1 changed files with 42 additions and 1 deletions

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@ -23,7 +23,7 @@
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de> ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
;;; Copyright © 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2021 Felix Gruber <felgru@posteo.net> ;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
;;; Copyright © 2022 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; Copyright © 2022, 2023 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022 Antero Mejr <antero@mailbox.org> ;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
@ -7986,6 +7986,47 @@ tasks.")
Pore-C concatemers.") Pore-C concatemers.")
(license license:gpl3)))) (license license:gpl3))))
(define-public r-doubletcollection
(let ((commit "c0d62f1853942ee6a087eaf7b000d9e4261e2dfd")
(revision "1"))
(package
(name "r-doubletcollection")
(version (git-version "1.1.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/xnnba1984/DoubletCollection")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"02cvibyc2nwc4037ramm5cskjwyrb9ib9hkrfhmvhbslkn5ixz1v"))))
(properties `((upstream-name . "DoubletCollection")))
(build-system r-build-system)
(propagated-inputs (list r-biocgenerics
r-doubletfinder
r-gam
r-ggplot2
r-ggthemes
r-mast
r-mclust
r-prroc
r-reticulate
r-scales
r-scdblfinder
r-scds
r-seurat
r-singlecellexperiment
r-slingshot
r-summarizedexperiment))
(home-page "https://github.com/xnnba1984/DoubletCollection")
(synopsis "Tool for finding doublets in scRNA-seq data")
(description
"This is an R package that integrates the installation of
doublet-detection methods. In addition, this tool is used for execution and
benchmark of those eight mentioned methods.")
(license license:gpl3+))))
(define-public r-pando (define-public r-pando
(package (package
(name "r-pando") (name "r-pando")