gnu: Add r-dada2.
* gnu/packages/bioconductor.scm (r-dada2): New variable.
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		|  | @ -16743,6 +16743,43 @@ ensemble machine learning for the estimation of nuisance functions.") | |||
| visualizing bisulfite sequencing data.") | ||||
|     (license license:artistic2.0))) | ||||
| 
 | ||||
| (define-public r-dada2 | ||||
|   (package | ||||
|     (name "r-dada2") | ||||
|     (version "1.24.0") | ||||
|     (source (origin | ||||
|               (method url-fetch) | ||||
|               (uri (bioconductor-uri "dada2" version)) | ||||
|               (sha256 | ||||
|                (base32 | ||||
|                 "0nvjnmcjh0i660y8s3rh9b3zl163wxdx7qm2n36m6vf0iy987l4x")))) | ||||
|     (properties `((upstream-name . "dada2"))) | ||||
|     (build-system r-build-system) | ||||
|     (propagated-inputs | ||||
|      (list r-biocgenerics | ||||
|            r-biostrings | ||||
|            r-ggplot2 | ||||
|            r-iranges | ||||
|            r-rcpp | ||||
|            r-rcppparallel | ||||
|            r-reshape2 | ||||
|            r-shortread | ||||
|            r-xvector)) | ||||
|     (native-inputs (list r-knitr)) | ||||
|     (home-page "https://benjjneb.github.io/dada2/") | ||||
|     (synopsis | ||||
|      "Accurate, high-resolution sample inference from amplicon sequencing data") | ||||
|     (description | ||||
|      "The dada2 package infers exact @dfn{amplicon sequence variants} (ASVs) | ||||
| from high-throughput amplicon sequencing data, replacing the coarser and less | ||||
| accurate OTU clustering approach.  The dada2 pipeline takes as input | ||||
| demultiplexed fastq files, and outputs the sequence variants and their | ||||
| sample-wise abundances after removing substitution and chimera errors. | ||||
| Taxonomic classification is available via a native implementation of the RDP | ||||
| naive Bayesian classifier, and species-level assignment to 16S rRNA gene | ||||
| fragments by exact matching.") | ||||
|     (license license:lgpl2.0))) | ||||
| 
 | ||||
| (define-public r-dmrseq | ||||
|   (package | ||||
|     (name "r-dmrseq") | ||||
|  |  | |||
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