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gnu: python-numpy: Reorganize patches. 

* gnu/packages/python.scm (python-numpy)[arguments]<phases>: Delete phase
"set-environment-variables".
Add phase "configure-blas-lapack". Move phase "check" after phase "install".
master
Konrad Hinsen 2017-12-20 17:18:56 +01:00 committed by Danny Milosavljevic
parent 916bb9470a
commit e144cbcf85
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1 changed files with 33 additions and 30 deletions
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gnu/packages/python.scm
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@ -2619,12 +2619,12 @@ between language specification and implementation aspects.")
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'build 'set-environment-variables
(lambda* (#:key inputs #:allow-other-keys)
(call-with-output-file "site.cfg"
(lambda (port)
(format port
"[openblas]
(add-before 'build 'configure-blas-lapack
(lambda* (#:key inputs #:allow-other-keys)
(call-with-output-file "site.cfg"
(lambda (port)
(format port
"[openblas]
libraries = openblas
library_dirs = ~a/lib
include_dirs = ~a/include
@ -2635,30 +2635,33 @@ lapack_libs = lapack
library_dirs = ~a/lib
include_dirs = ~a/include
"
(assoc-ref inputs "openblas")
(assoc-ref inputs "openblas")
(assoc-ref inputs "lapack")
(assoc-ref inputs "lapack"))))
;; Make /gnu/store/...-bash-.../bin/sh the default shell, instead of
;; /bin/sh.
(substitute* "numpy/distutils/exec_command.py"
(("(os.environ.get\\('SHELL', ')(/bin/sh'\\))" match match-start match-end)
(string-append match-start (assoc-ref inputs "bash") match-end)))
;; Use "gcc" executable, not "cc".
(substitute* "numpy/distutils/system_info.py"
(("c = distutils\\.ccompiler\\.new_compiler\\(\\)")
"c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')"))
#t))
;; Tests can only be run after the library has been installed and not
;; within the source directory.
(delete 'check)
(add-after 'install 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
;; Make installed package available for running the tests
(add-installed-pythonpath inputs outputs)
(with-directory-excursion "/tmp"
(zero? (system* "python" "-c"
"import numpy; numpy.test(verbose=2)"))))))))
(assoc-ref inputs "openblas")
(assoc-ref inputs "openblas")
(assoc-ref inputs "lapack")
(assoc-ref inputs "lapack"))))
#t))
(add-before 'build 'fix-executable-paths
(lambda* (#:key inputs #:allow-other-keys)
;; Make /gnu/store/...-bash-.../bin/sh the default shell,
;; instead of /bin/sh.
(substitute* "numpy/distutils/exec_command.py"
(("(os.environ.get\\('SHELL', ')(/bin/sh'\\))" match match-start match-end)
(string-append match-start (assoc-ref inputs "bash") match-end)))
;; Use "gcc" executable, not "cc".
(substitute* "numpy/distutils/system_info.py"
(("c = distutils\\.ccompiler\\.new_compiler\\(\\)")
"c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')"))
#t))
;; Tests can only be run after the library has been installed and not
;; within the source directory.
(delete 'check)
(add-after 'install 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
;; Make installed package available for running the tests
(add-installed-pythonpath inputs outputs)
(with-directory-excursion "/tmp"
(zero? (system* "python" "-c"
"import numpy; numpy.test(verbose=2)"))))))))
(home-page "http://www.numpy.org/")
(synopsis "Fundamental package for scientific computing with Python")
(description "NumPy is the fundamental package for scientific computing